On the evolution of morphogenetic models: mechano-chemical interactions and an integrated view of cell differentiation, growth, pattern formation and morphogenesis

Network News: Innovations in 21st Century Systems Biology

(2011) Adam P. Arkin et al.   CELL

Dynamics of Dpp Signaling and Proliferation Control

(2011) O. Wartlick et al.   SCIENCE

Computational Morphodynamics: A Modeling Framework to Understand Plant Growth

(2010) Vijay Chickarmane et al.   Annual Review of Plant Biology

The mechanics of development: Models and methods for tissue morphogenesis

(2010) Nikolce Gjorevski et al.   BIRTH DEFECTS RESEARCH PART C-EMBRYO TODAY-REVIEWS

Morphogen Gradients: Limits to Signaling or Limits to Measurement?

(2010) Jacques P. Bothma et al.   CURRENT BIOLOGY

Lighting up developmental mechanisms: how fluorescence imaging heralded a new era

(2010) M. Mavrakis et al.   DEVELOPMENT

Geometric control of human stem cell morphology and differentiation

(2010) Leo Q. Wan et al.   Integrative Biology

Modeling tumor growth and treatment response based on quantitative imaging data

(2010) Thomas E. Yankeelov et al.   Integrative Biology

Positional information and patterning revisited

(2010) Lewis Wolpert   JOURNAL OF THEORETICAL BIOLOGY

A computational model of teeth and the developmental origins of morphological variation

(2010) Isaac Salazar-Ciudad et al.   NATURE

A hybrid approach to multi-scale modelling of cancer

(2010) J. M. Osborne et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES

Front Instabilities and Invasiveness of Simulated 3D Avascular Tumors

(2010) Nikodem J. Poplawski et al.   PLoS One

Modeling Gastrulation in the Chick Embryo: Formation of the Primitive Streak

(2010) Bakhtier Vasiev et al.   PLoS One

The Role of Spatially Controlled Cell Proliferation in Limb Bud Morphogenesis

(2010) Bernd Boehm et al.   PLOS BIOLOGY

Detecting Mitoses in Time-Lapse Images of Embryonic Epithelia Using Intensity Analysis

(2009) Parthipan Siva et al.   ANNALS OF BIOMEDICAL ENGINEERING

Geometric control of tissue morphogenesis

(2009) Celeste M. Nelson   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

From mechanotransduction to extracellular matrix gene expression in fibroblasts

(2009) Matthias Chiquet et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Reprogramming cell fates: reconciling rarity with robustness

(2009) Sui Huang   BIOESSAYS

Combining Laser Microsurgery and Finite Element Modeling to Assess Cell-Level Epithelial Mechanics

(2009) M. Shane Hutson et al.   BIOPHYSICAL JOURNAL

Multi-scale mechanics from molecules to morphogenesis

(2009) Lance Davidson et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

Determination of mechanical stress distribution in Drosophila wing discs using photoelasticity

(2009) Ulrike Nienhaus et al.   MECHANISMS OF DEVELOPMENT

Modelling the Drosophila embryo

(2009) Johannes Jaeger   Molecular BioSystems

Quantitative imaging of collective cell migration during Drosophila gastrulation: multiphoton microscopy and computational analysis

(2009) Willy Supatto et al.   Nature Protocols

Quantitative approaches in developmental biology

(2009) Andrew C. Oates et al.   NATURE REVIEWS GENETICS

3D Multi-Cell Simulation of Tumor Growth and Angiogenesis

(2009) Abbas Shirinifard et al.   PLoS One

Imaging cell signalling and movement in development

(2009) Manli Chuai et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Canalization of Gene Expression and Domain Shifts in the Drosophila Blastoderm by Dynamical Attractors

(2009) Manu et al.   PLoS Computational Biology

An All-Optical Approach for Probing Microscopic Flows in Living Embryos

(2008) Willy Supatto et al.   BIOPHYSICAL JOURNAL

Tissue Deformation Modulates Twist Expression to Determine Anterior Midgut Differentiation in Drosophila Embryos

(2008) Nicolas Desprat et al.   DEVELOPMENTAL CELL

A 3-D model used to explore how cell adhesion and stiffness affect cell sorting and movement in multicellular systems

(2008) Eirikur Palsson   JOURNAL OF THEORETICAL BIOLOGY

Network Evolution of Body Plans

(2008) Koichi Fujimoto et al.   PLoS One

Dynamic Analyses of Drosophila Gastrulation Provide Insights into Collective Cell Migration

(2008) A. McMahon et al.   SCIENCE

Reconstruction of Zebrafish Early Embryonic Development by Scanned Light Sheet Microscopy

(2008) P. J. Keller et al.   SCIENCE

Contact-Inhibited Chemotaxis in De Novo and Sprouting Blood-Vessel Growth

(2008) Roeland M. H. Merks et al.   PLoS Computational Biology

Phyllotaxis: Cooperation and competition between mechanical and biochemical processes

(2007) Alan C. Newell et al.   JOURNAL OF THEORETICAL BIOLOGY