SparkSeq: fast, scalable and cloud-ready tool for the interactive genomic data analysis with nucleotide precision

Differential expression analysis of RNA-seq data at single-base resolution

(2014) A. C. Frazee et al.   BIOSTATISTICS

SeqPig: simple and scalable scripting for large sequencing data sets in Hadoop

(2013) André Schumacher et al.   BIOINFORMATICS

Count-based differential expression analysis of RNA sequencing data using R and Bioconductor

(2013) Simon Anders et al.   Nature Protocols

Hadoop-BAM: directly manipulating next generation sequencing data in the cloud

(2012) Matti Niemenmaa et al.   BIOINFORMATICS

An overview of the Hadoop/MapReduce/HBase framework and its current applications in bioinformatics

(2011) Ronald C Taylor   BMC BIOINFORMATICS

rnaSeqMap: a Bioconductor package for RNA sequencing data exploration

(2011) Anna Leśniewska et al.   BMC BIOINFORMATICS

Cloud-scale RNA-sequencing differential expression analysis with Myrna

(2010) Ben Langmead et al.   GENOME BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS