Detection of active transcription factor binding sites with the combination of DNase hypersensitivity and histone modifications
Published 2014 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Detection of active transcription factor binding sites with the combination of DNase hypersensitivity and histone modifications
Authors
Keywords
-
Journal
BIOINFORMATICS
Volume 30, Issue 22, Pages 3143-3151
Publisher
Oxford University Press (OUP)
Online
2014-08-02
DOI
10.1093/bioinformatics/btu519
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles
- (2013) Anthony Mathelier et al. NUCLEIC ACIDS RESEARCH
- Predicting cell-type-specific gene expression from regions of open chromatin
- (2012) A. Natarajan et al. GENOME RESEARCH
- Sequence and chromatin determinants of cell-type-specific transcription factor binding
- (2012) A. Arvey et al. GENOME RESEARCH
- Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements
- (2012) A. Kundaje et al. GENOME RESEARCH
- ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
- (2012) S. G. Landt et al. GENOME RESEARCH
- An expansive human regulatory lexicon encoded in transcription factor footprints
- (2012) Shane Neph et al. NATURE
- The accessible chromatin landscape of the human genome
- (2012) Robert E. Thurman et al. NATURE
- Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium
- (2012) J. Wang et al. NUCLEIC ACIDS RESEARCH
- Epigenetic priors for identifying active transcription factor binding sites
- (2011) Gabriel Cuellar-Partida et al. BIOINFORMATICS
- Determinants and dynamics of genome accessibility
- (2011) Oliver Bell et al. NATURE REVIEWS GENETICS
- High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells
- (2010) A. P. Boyle et al. GENOME RESEARCH
- Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data
- (2010) R. Pique-Regi et al. GENOME RESEARCH
- UniPROBE, update 2011: expanded content and search tools in the online database of protein-binding microarray data on protein-DNA interactions
- (2010) K. Robasky et al. NUCLEIC ACIDS RESEARCH
- Evaluation of Algorithm Performance in ChIP-Seq Peak Detection
- (2010) Elizabeth G. Wilbanks et al. PLoS One
- Genome-wide prediction of transcription factor binding sites using an integrated model
- (2010) Kyoung-Jae Won et al. GENOME BIOLOGY
- Motif discovery and motif finding from genome-mapped DNase footprint data
- (2009) Ivan V. Kulakovskiy et al. BIOINFORMATICS
- Biopython: freely available Python tools for computational molecular biology and bioinformatics
- (2009) P. J. A. Cock et al. BIOINFORMATICS
- Finding evolutionarily conserved cis-regulatory modules with a universal set of motifs
- (2009) Bartek Wilczynski et al. BMC BIOINFORMATICS
- ChIP-Seq of transcription factors predicts absolute and differential gene expression in embryonic stem cells
- (2009) Z. Ouyang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Discovery and Annotation of Functional Chromatin Signatures in the Human Genome
- (2009) Gary Hon et al. PLoS Computational Biology
- F-Seq: a feature density estimator for high-throughput sequence tags
- (2008) A. P. Boyle et al. BIOINFORMATICS
- An Extended Transcriptional Network for Pluripotency of Embryonic Stem Cells
- (2008) Jonghwan Kim et al. CELL
- High-throughput chromatin information enables accurate tissue-specific prediction of transcription factor binding sites
- (2008) Tom Whitington et al. NUCLEIC ACIDS RESEARCH
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now