SeqGSEA: a Bioconductor package for gene set enrichment analysis of RNA-Seq data integrating differential expression and splicing

Gene set enrichment analysis of RNA-Seq data: integrating differential expression and splicing

(2013) Xi Wang et al.   BMC BIOINFORMATICS

Technical and biological variance structure in mRNA-Seq data: life in the real world

(2012) Ann L Oberg et al.   BMC GENOMICS

Identifying differentially spliced genes from two groups of RNA-seq samples

(2012) Weichen Wang et al.   GENE

Landscape of transcription in human cells

(2012) Sarah Djebali et al.   NATURE

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Alternative isoform regulation in human tissue transcriptomes

(2008) Eric T. Wang et al.   NATURE