An adaptive workflow coupled with Random Forest algorithm to identify intact N-glycopeptides detected from mass spectrometry

Automated Assignments of N- and O-Site Specific Glycosylation with Extensive Glycan Heterogeneity of Glycoprotein Mixtures

(2013) John S. Strum et al.   ANALYTICAL CHEMISTRY

Sweet-Heart — An integrated suite of enabling computational tools for automated MS2/MS3 sequencing and identification of glycopeptides

(2013) Sz-Wei Wu et al.   Journal of Proteomics

Improve accuracy and sensibility in glycan structure prediction by matching glycan isotope abundance

(2012) Guang Xu et al.   ANALYTICA CHIMICA ACTA

Rapid glycopeptide enrichment and N-glycosylation site mapping strategies based on amine-functionalized magnetic nanoparticles

(2012) Chu-Wei Kuo et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

GlycoPep Grader: A Web-Based Utility for Assigning the Composition ofN-Linked Glycopeptides

(2012) Carrie L. Woodin et al.   ANALYTICAL CHEMISTRY

Glycomics, glycoproteomics and the immune system

(2012) Daniel Kolarich et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Site-specific glycoproteomics confirms that protein structure dictates formation of N-glycan type, core fucosylation and branching

(2012) Morten Thaysen-Andersen et al.   GLYCOBIOLOGY

“Casting” light on the role of glycosylation during embryonic development: Insights from zebrafish

(2012) Heather R. Flanagan-Steet et al.   GLYCOCONJUGATE JOURNAL

Semi-Automated Identification of N-Glycopeptides by Hydrophilic Interaction Chromatography, nano-Reverse-Phase LC–MS/MS, and Glycan Database Search

(2012) Petr Pompach et al.   JOURNAL OF PROTEOME RESEARCH

GlycReSoft: A Software Package for Automated Recognition of Glycans from LC/MS Data

(2012) Evan Maxwell et al.   PLoS One

LIBSVM

(2012) Chih-Chung Chang et al.   ACM Transactions on Intelligent Systems and Technology

Systems glycobiology: biochemical reaction networks regulating glycan structure and function

(2011) S. Neelamegham et al.   GLYCOBIOLOGY

Specific Sites of N-Linked Glycosylation on the Hemagglutinin of H1N1 Subtype Influenza A Virus Determine Sensitivity to Inhibitors of the Innate Immune System and Virulence in Mice

(2011) M. D. Tate et al.   JOURNAL OF IMMUNOLOGY

N-Glycans Modulate the Function of Human Corticosteroid-Binding Globulin

(2011) Zeynep Sumer-Bayraktar et al.   MOLECULAR & CELLULAR PROTEOMICS

Improving confidence in detection and characterization of protein N-glycosylation sites and microheterogeneity

(2011) Anoop M. Mayampurath et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Enhancement of Plant Metabolite Fingerprinting by Machine Learning

(2010) I. M. Scott et al.   PLANT PHYSIOLOGY

Integrated data management and validation platform for phosphorylated tandem mass spectrometry data

(2010) Anna-Maria Lahesmaa-Korpinen et al.   PROTEOMICS

Mapping site-specific protein N-glycosylations through liquid chromatography/mass spectrometry and targeted tandem mass spectrometry

(2010) Yin Wu et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Analysis of Glycosylation and Other Post-Translational Modifications by Mass Spectrometry

(2009) Willy Morelle   Current Analytical Chemistry

A mathematical model to derive N-glycan structures and cellular enzyme activities from mass spectrometric data

(2009) Frederick J Krambeck et al.   GLYCOBIOLOGY

Prediction of high-responding peptides for targeted protein assays by mass spectrometry

(2009) Vincent A Fusaro et al.   NATURE BIOTECHNOLOGY

DeconMSn: a software tool for accurate parent ion monoisotopic mass determination for tandem mass spectra

(2008) A. M. Mayampurath et al.   BIOINFORMATICS

Classification of premalignant pancreatic cancer mass-spectrometry data using decision tree ensembles

(2008) Guangtao Ge et al.   BMC BIOINFORMATICS

Prediction of glycosylation sites using random forests

(2008) Stephen E Hamby et al.   BMC BIOINFORMATICS

Functional roles of N-glycans in cell signaling and cell adhesion in cancer

(2008) Yan-Yang Zhao et al.   CANCER SCIENCE

N-Glycoproteomics – An automated workflow approach

(2008) Sakari Joenväärä et al.   GLYCOBIOLOGY

GlycoMiner: a new software tool to elucidate glycopeptide composition

(2008) Oliver Ozohanics et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY