Robust clinical outcome prediction based on Bayesian analysis of transcriptional profiles and prior causal networks

Regularization Paths for Generalized Linear Models via Coordinate Descent

(2015) Jerome Friedman et al.   Journal of Statistical Software

Molecular causes of transcriptional response: a Bayesian prior knowledge approach

(2013) Kourosh Zarringhalam et al.   BIOINFORMATICS

A common rejection module (CRM) for acute rejection across multiple organs identifies novel therapeutics for organ transplantation

(2013) Purvesh Khatri et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Criteria for the use of omics-based predictors in clinical trials

(2013) Lisa M. McShane et al.   NATURE

The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases

(2013) Sandra Orchard et al.   NUCLEIC ACIDS RESEARCH

Prognostic gene signatures for patient stratification in breast cancer - accuracy, stability and interpretability of gene selection approaches using prior knowledge on protein-protein interactions

(2012) Yupeng Cun et al.   BMC BIOINFORMATICS

Preparing for Precision Medicine

(2012) Reza Mirnezami et al.   NEW ENGLAND JOURNAL OF MEDICINE

Novel immunosuppressive agents in kidney transplantation

(2011) J.E. Cooper et al.   CLINICAL NEPHROLOGY

Most Random Gene Expression Signatures Are Significantly Associated with Breast Cancer Outcome

(2011) David Venet et al.   PLoS Computational Biology

Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM

(2010) Charles J. Vaske et al.   BIOINFORMATICS

The Toll-Like Receptor 4 D299G and T399I Polymorphisms Are Associated with Crohn’s Disease and Ulcerative Colitis: A Meta-Analysis

(2010) Xiuyun Shen et al.   DIGESTION

A molecular classifier for predicting future graft loss in late kidney transplant biopsies

(2010) Gunilla Einecke et al.   JOURNAL OF CLINICAL INVESTIGATION

Mucosal gene signatures to predict response to infliximab in patients with ulcerative colitis

(2009) I. Arijs et al.   GUT

Ulcerative colitis–risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study

(2009) Mark S Silverberg et al.   NATURE GENETICS