Molecular principles of human virus protein–protein interactions

Viral proteins that bridge unconnected proteins and components in the human PPI network

(2014) H. R. Rachita et al.   Molecular BioSystems

The intrinsic disorder status of the human hepatitis C virus proteome

(2014) Xiao Fan et al.   Molecular BioSystems

A Million Peptide Motifs for the Molecular Biologist

(2014) Peter Tompa et al.   MOLECULAR CELL

Use of Host-like Peptide Motifs in Viral Proteins Is a Prevalent Strategy in Host-Virus Interactions

(2014) Tzachi Hagai et al.   Cell Reports

Marked Variability in the Extent of Protein Disorder within and between Viral Families

(2013) Ravindra Pushker et al.   PLoS One

Signatures of Pleiotropy, Economy and Convergent Evolution in a Domain-Resolved Map of Human–Virus Protein–Protein Interaction Networks

(2013) Sara Garamszegi et al.   PLoS Pathogens

Rules of Engagement: Molecular Insights from Host-Virus Arms Races

(2012) Matthew D. Daugherty et al.   Annual Review of Genetics

Motif switches: decision-making in cell regulation

(2012) Kim Van Roey et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Orderly order in protein intrinsic disorder distribution: disorder in 3500 proteomes from viruses and the three domains of life

(2012) Bin Xue et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Viruses and Interactomes in Translation

(2012) Laurène Meyniel-Schicklin et al.   MOLECULAR & CELLULAR PROTEOMICS

PaxDb, a Database of Protein Abundance Averages Across All Three Domains of Life

(2012) M. Wang et al.   MOLECULAR & CELLULAR PROTEOMICS

Viral immune modulators perturb the human molecular network by common and unique strategies

(2012) Andreas Pichlmair et al.   NATURE

iELM--a web server to explore short linear motif-mediated interactions

(2012) R. J. Weatheritt et al.   NUCLEIC ACIDS RESEARCH

Host-pathogen interactome mapping for HTLV-1 and -2 retroviruses

(2012) Nicolas Simonis et al.   Retrovirology

Proteome-Wide Discovery of Evolutionary Conserved Sequences in Disordered Regions

(2012) A. N. Nguyen Ba et al.   Science Signaling

A cross-species view on viruses

(2012) Sara L Sawyer et al.   Current Opinion in Virology

Determining Host Metabolic Limitations on Viral Replication via Integrated Modeling and Experimental Perturbation

(2012) Elsa W. Birch et al.   PLoS Computational Biology

The Battle over mTOR: An Emerging Theatre in Host–Pathogen Immunity

(2012) Sunil Martin et al.   PLoS Pathogens

Toward a three-dimensional view of protein networks between species

(2012) Eric A. Franzosa et al.   Frontiers in Microbiology

When the human viral infectome and diseasome networks collide: towards a systems biology platform for the aetiology of human diseases

(2011) Vincent Navratil et al.   BMC Systems Biology

Intrinsically disordered proteins: regulation and disease

(2011) M Madan Babu et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Hepatitis C Virus Stimulates the Phosphatidylinositol 4-Kinase III Alpha-Dependent Phosphatidylinositol 4-Phosphate Production That Is Essential for Its Replication

(2011) K. L. Berger et al.   JOURNAL OF VIROLOGY

A Physical Interaction Network of Dengue Virus and Human Proteins

(2011) Sudip Khadka et al.   MOLECULAR & CELLULAR PROTEOMICS

ELM--the database of eukaryotic linear motifs

(2011) H. Dinkel et al.   NUCLEIC ACIDS RESEARCH

Structural principles within the human-virus protein-protein interaction network

(2011) E. A. Franzosa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multifaceted roles for lipids in viral infection

(2011) Nicholas S. Heaton et al.   TRENDS IN MICROBIOLOGY

WW domain interactions regulate the Hippo tumor suppressor pathway

(2011) Z Salah et al.   Cell Death & Disease

Ensembl BioMarts: a hub for data retrieval across taxonomic space

(2011) R. J. Kinsella et al.   Database-The Journal of Biological Databases and Curation

Signatures of Environmental Genetic Adaptation Pinpoint Pathogens as the Main Selective Pressure through Human Evolution

(2011) Matteo Fumagalli et al.   PLoS Genetics

Bringing order to protein disorder through comparative genomics and genetic interactions

(2011) Jeremy Bellay et al.   GENOME BIOLOGY

Understanding protein non-folding

(2010) Vladimir N. Uversky et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

DOMINE: a comprehensive collection of known and predicted domain-domain interactions

(2010) Sailu Yellaboina et al.   NUCLEIC ACIDS RESEARCH

Viral Organization of Human Proteins

(2010) Stefan Wuchty et al.   PLoS One

How viruses hijack cell regulation

(2010) Norman E. Davey et al.   TRENDS IN BIOCHEMICAL SCIENCES

ANCHOR: web server for predicting protein binding regions in disordered proteins

(2009) Z. Dosztanyi et al.   BIOINFORMATICS

Initiation of lytic DNA replication in Epstein–Barr virus: search for a common family mechanism

(2009) Andrew J Rennekamp et al.   Future Virology

Analysis of Vaccinia Virus−Host Protein−Protein Interactions: Validations of Yeast Two-Hybrid Screenings

(2009) Leiliang Zhang et al.   JOURNAL OF PROTEOME RESEARCH

Comparing Models of Evolution for Ordered and Disordered Proteins

(2009) C. J. Brown et al.   MOLECULAR BIOLOGY AND EVOLUTION

The IntAct molecular interaction database in 2010

(2009) B. Aranda et al.   NUCLEIC ACIDS RESEARCH

Unfoldomics of Human Genetic Diseases: Illustrative Examples of Ordered and Intrinsically Disordered Members of the Human Diseasome

(2009) Uros Midic et al.   PROTEIN AND PEPTIDE LETTERS

BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources

(2009) Chunlei Wu et al.   GENOME BIOLOGY

Intrinsically Disordered Proteins in Human Diseases: Introducing the D2 Concept

(2008) Vladimir N. Uversky et al.   Annual Review of Biophysics

Global Analysis of Host-Pathogen Interactions that Regulate Early-Stage HIV-1 Replication

(2008) Renate König et al.   CELL

Genome-Scale RNAi Screen for Host Factors Required for HIV Replication

(2008) Honglin Zhou et al.   Cell Host & Microbe

Understanding eukaryotic linear motifs and their role in cell signaling and regulation

(2008) Francesca Diella   Frontiers in Bioscience-Landmark

The role of disorder in interaction networks: a structural analysis

(2008) Philip M Kim et al.   Molecular Systems Biology

Hepatitis C virus infection protein network

(2008) B de Chassey et al.   Molecular Systems Biology

RNA interference screen for human genes associated with West Nile virus infection

(2008) Manoj N. Krishnan et al.   NATURE

PIG--the pathogen interaction gateway

(2008) T. Driscoll et al.   NUCLEIC ACIDS RESEARCH

VirusMINT: a viral protein interaction database

(2008) A. Chatr-aryamontri et al.   NUCLEIC ACIDS RESEARCH

Human Protein Reference Database--2009 update

(2008) T. S. Keshava Prasad et al.   NUCLEIC ACIDS RESEARCH

The Landscape of Human Proteins Interacting with Viruses and Other Pathogens

(2008) Matthew D. Dyer et al.   PLoS Pathogens

Tight Regulation of Unstructured Proteins: From Transcript Synthesis to Protein Degradation

(2008) J. Gsponer et al.   SCIENCE