Computational identification of natural peptides based on analysis of molecular evolution

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Identification of Peptide Lv, a Novel Putative Neuropeptide That Regulates the Expression of L-Type Voltage-Gated Calcium Channels in Photoreceptors

(2012) Liheng Shi et al.   PLoS One

firestar —advances in the prediction of functionally important residues

(2011) Gonzalo Lopez et al.   NUCLEIC ACIDS RESEARCH

ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids

(2010) H. Ashkenazy et al.   NUCLEIC ACIDS RESEARCH

Systematic antigenic profiling of hematopoietic antigens on ovarian carcinoma cells identifies membrane proteins for targeted therapy development

(2009) Limor Helpman et al.   AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY

Evolutionary Sequence Modeling for Discovery of Peptide Hormones

(2009) Kemal Sonmez et al.   PLoS Computational Biology

Predicting proteolytic sites in extracellular proteins: only halfway there

(2008) Yossef Kliger et al.   BIOINFORMATICS

Discovery and Validation of Novel Peptide Agonists for G-protein-coupled Receptors

(2008) Ronen Shemesh et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Identification of a biologically active, small, secreted peptide in Arabidopsis byin silicogene screening, followed by LC-MS-based structure analysis

(2008) Kentaro Ohyama et al.   PLANT JOURNAL