BioPig: a Hadoop-based analytic toolkit for large-scale sequence data

Eoulsan: a cloud computing-based framework facilitating high throughput sequencing analyses

(2012) Laurent Jourdren et al.   BIOINFORMATICS

Hadoop-BAM: directly manipulating next generation sequencing data in the cloud

(2012) Matti Niemenmaa et al.   BIOINFORMATICS

Classifying Proteins into Functional Groups Based on All-versus-All BLAST of 10 Million Proteins

(2011) Natali Kolker et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen

(2011) M. Hess et al.   SCIENCE

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

A map of human genome variation from population-scale sequencing

(2010) Richard M. Durbin et al.   NATURE

Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores

(2010) P. B. Pope et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cloud-scale RNA-sequencing differential expression analysis with Myrna

(2010) Ben Langmead et al.   GENOME BIOLOGY

CloudBurst: highly sensitive read mapping with MapReduce

(2009) M. C. Schatz   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Searching for SNPs with cloud computing

(2009) Ben Langmead et al.   GENOME BIOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH