Genome compression: a novel approach for large collections

The human genome contracts again

(2013) Dmitri S. Pavlichin et al.   BIOINFORMATICS

Compression of FASTQ and SAM Format Sequencing Data

(2013) James K. Bonfield et al.   PLoS One

Adaptive efficient compression of genomes

(2012) Sebastian Wandelt et al.   Algorithms for Molecular Biology

Large-scale compression of genomic sequence databases with the Burrows-Wheeler transform

(2012) A. J. Cox et al.   BIOINFORMATICS

SCALCE: boosting sequence compression algorithms using locally consistent encoding

(2012) Faraz Hach et al.   BIOINFORMATICS

Handling the data management needs of high-throughput sequencing data: SpeedGene, a compression algorithm for the efficient storage of genetic data

(2012) Dandi Qiao et al.   BMC BIOINFORMATICS

An integrated map of genetic variation from 1,092 human genomes

(2012)   NATURE

NGC: lossless and lossy compression of aligned high-throughput sequencing data

(2012) Niko Popitsch et al.   NUCLEIC ACIDS RESEARCH

Compression of next-generation sequencing reads aided by highly efficient de novo assembly

(2012) Daniel C. Jones et al.   NUCLEIC ACIDS RESEARCH

A public resource facilitating clinical use of genomes

(2012) Madeleine P. Ball et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

On compressing and indexing repetitive sequences

(2012) Sebastian Kreft et al.   THEORETICAL COMPUTER SCIENCE

Robust relative compression of genomes with random access

(2011) Sebastian Deorowicz et al.   BIOINFORMATICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

GReEn: a tool for efficient compression of genome resequencing data

(2011) Armando J. Pinho et al.   NUCLEIC ACIDS RESEARCH

On the Representability of Complete Genomes by Multiple Competing Finite-Context (Markov) Models

(2011) Armando J. Pinho et al.   PLoS One

Storage and Retrieval of Highly Repetitive Sequence Collections

(2010) Veli Mäkinen et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Human genomes as email attachments

(2008) Scott Christley et al.   BIOINFORMATICS