Learning gene network structure from time laps cell imaging in RNAi Knock downs

MC EMiNEM Maps the Interaction Landscape of the Mediator

(2012) Theresa Niederberger et al.   PLoS Computational Biology

Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software

(2011) Lee Kamentsky et al.   BIOINFORMATICS

Fast and efficient dynamic nested effects models

(2010) Holger Fröhlich et al.   BIOINFORMATICS

TRANSWESD: inferring cellular networks with transitive reduction

(2010) Steffen Klamt et al.   BIOINFORMATICS

Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes

(2010) Beate Neumann et al.   NATURE

Predicting causal effects in large-scale systems from observational data

(2010) Marloes H Maathuis et al.   NATURE METHODS

Estimating high-dimensional intervention effects from observational data

(2009) Marloes H. Maathuis et al.   ANNALS OF STATISTICS

Reconstructing signaling pathways from RNAi data using probabilistic Boolean threshold networks

(2009) Lars Kaderali et al.   BIOINFORMATICS

Complex Systems: From Chemistry to Systems Biology Special Feature: Modeling the temporal interplay of molecular signaling and gene expression by using dynamic nested effects models

(2009) B. Anchang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Factor Graph Nested Effects Model To Identify Networks from Genetic Perturbations

(2009) Charles J. Vaske et al.   PLoS Computational Biology

Estimating large-scale signaling networks through nested effect models with intervention effects from microarray data

(2008) H. Frohlich et al.   BIOINFORMATICS