Flux balance impact degree: a new definition of impact degree to properly treat reversible reactions in metabolic networks

Minimal cut sets in a metabolic network are elementary modes in a dual network

(2011) Kathrin Ballerstein et al.   BIOINFORMATICS

An Efficient Method of Computing Impact Degrees for Multiple Reactions in Metabolic Networks with Cycles

(2011) Takeyuki TAMURA et al.   IEICE TRANSACTIONS ON INFORMATION AND SYSTEMS

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions

(2010) Jan Schellenberger et al.   BMC BIOINFORMATICS

Computationally efficient flux variability analysis

(2010) Steinn Gudmundsson et al.   BMC BIOINFORMATICS

Compensatory ability to null mutation in metabolic networks

(2009) Da Jiang et al.   BIOTECHNOLOGY AND BIOENGINEERING

Flux balance analysis of biological systems: applications and challenges

(2009) K. Raman et al.   BRIEFINGS IN BIOINFORMATICS

Predicting metabolic biomarkers of human inborn errors of metabolism

(2009) Tomer Shlomi et al.   Molecular Systems Biology

Update on the Keio collection of Escherichia coli single-gene deletion mutants

(2009) Natsuko Yamamoto et al.   Molecular Systems Biology

Elementary mode analysis: a useful metabolic pathway analysis tool for characterizing cellular metabolism

(2008) Cong T. Trinh et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Modes and cuts in metabolic networks: Complexity and algorithms

(2008) Vicente Acuña et al.   BIOSYSTEMS

Computing Knock-Out Strategies in Metabolic Networks

(2008) Utz-Uwe Haus et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Cascading failure and robustness in metabolic networks

(2008) A. G. Smart et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An environmental perspective on metabolism

(2007) Thomas Handorf et al.   JOURNAL OF THEORETICAL BIOLOGY

Structural robustness of metabolic networks with respect to multiple knockouts

(2007) Jörn Behre et al.   JOURNAL OF THEORETICAL BIOLOGY