- Home
- Publications
- Publication Search
- Publication Details
Title
FunFrame: functional gene ecological analysis pipeline
Authors
Keywords
-
Journal
BIOINFORMATICS
Volume 29, Issue 9, Pages 1212-1214
Publisher
Oxford University Press (OUP)
Online
2013-03-20
DOI
10.1093/bioinformatics/btt123
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- UCHIME improves sensitivity and speed of chimera detection
- (2011) Robert C. Edgar et al. BIOINFORMATICS
- HMM-FRAME: accurate protein domain classification for metagenomic sequences containing frameshift errors
- (2011) Yuan Zhang et al. BMC BIOINFORMATICS
- Removing Noise From Pyrosequenced Amplicons
- (2011) Christopher Quince et al. BMC BIOINFORMATICS
- ESPRIT-Tree: hierarchical clustering analysis of millions of 16S rRNA pyrosequences in quasilinear computational time
- (2011) Yunpeng Cai et al. NUCLEIC ACIDS RESEARCH
- Ironing out the wrinkles in the rare biosphere through improved OTU clustering
- (2010) Susan M. Huse et al. ENVIRONMENTAL MICROBIOLOGY
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
- (2010) Morgan N. Price et al. PLoS One
- Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
- (2009) P. D. Schloss et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- PyNAST: a flexible tool for aligning sequences to a template alignment
- (2009) J. G. Caporaso et al. BIOINFORMATICS
- Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates
- (2009) Victor Kunin et al. ENVIRONMENTAL MICROBIOLOGY
- Gene-targeted-metagenomics reveals extensive diversity of aromatic dioxygenase genes in the environment
- (2009) Shoko Iwai et al. ISME Journal
- Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data
- (2009) Micah Hamady et al. ISME Journal
- Accurate determination of microbial diversity from 454 pyrosequencing data
- (2009) Christopher Quince et al. NATURE METHODS
- Massively parallel pyrosequencing highlights minority variants in the HIV-1 env quasispecies deriving from lymphomonocyte sub-populations
- (2009) Gabriella Rozera et al. Retrovirology
- Phylogenetic Analysis of Nitrite, Nitric Oxide, and Nitrous Oxide Respiratory Enzymes Reveal a Complex Evolutionary History for Denitrification
- (2008) Christopher M. Jones et al. MOLECULAR BIOLOGY AND EVOLUTION
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started