The signal within the noise: efficient inference of stochastic gene regulation models using fluorescence histograms and stochastic simulations

Systematic Identification of Signal-Activated Stochastic Gene Regulation

(2013) G. Neuert et al.   SCIENCE

Accelerated maximum likelihood parameter estimation for stochastic biochemical systems

(2012) Bernie J Daigle et al.   BMC BIOINFORMATICS

Calibrating spatio-temporal models of leukocyte dynamics against in vivo live-imaging data using approximate Bayesian computation

(2012) Juliane Liepe et al.   Integrative Biology

A Stochastic Signaling Network Mediates the Probabilistic Induction of Cerebellar Long-Term Depression

(2012) G. Antunes et al.   JOURNAL OF NEUROSCIENCE

Elucidating the in vivo phosphorylation dynamics of the ERK MAP kinase using quantitative proteomics data and Bayesian model selection

(2012) Tina Toni et al.   Molecular BioSystems

Wisdom of crowds for robust gene network inference

(2012) Daniel Marbach et al.   NATURE METHODS

Moment-based inference predicts bimodality in transient gene expression

(2012) C. Zechner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bayesian parameter inference for stochastic biochemical network models using particle Markov chain Monte Carlo

(2011) A. Golightly et al.   Interface Focus

Parameter inference for discretely observed stochastic kinetic models using stochastic gradient descent

(2010) Yuanfeng Wang et al.   BMC Systems Biology

Approximate Moment Dynamics for Chemically Reacting Systems

(2010) Abhyudai Singh et al.   IEEE TRANSACTIONS ON AUTOMATIC CONTROL

Bayesian inference of biochemical kinetic parameters using the linear noise approximation

(2009) Michał Komorowski et al.   BMC BIOINFORMATICS

Listening to the noise: random fluctuations reveal gene network parameters

(2009) Brian Munsky et al.   Molecular Systems Biology

Timing and Dynamics of Single Cell Gene Expression in the Arabinose Utilization System

(2008) Judith A. Megerle et al.   BIOPHYSICAL JOURNAL

Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems

(2008) T. Toni et al.   Journal of the Royal Society Interface