Identifying functional modules in interaction networks through overlapping Markov clustering

NWE: Node-weighted expansion for protein complex prediction using random walk distances

(2011) Osamu Maruyama et al.   Proteome Science

SPICi: a fast clustering algorithm for large biological networks

(2010) Peng Jiang et al.   BIOINFORMATICS

The function of communities in protein interaction networks at multiple scales

(2010) Anna CF Lewis et al.   BMC Systems Biology

A Fast Hierarchical Clustering Algorithm for Functional Modules Discovery in Protein Interaction Networks

(2010) Jianxin Wang et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Link communities reveal multiscale complexity in networks

(2010) Yong-Yeol Ahn et al.   NATURE

The BioGRID Interaction Database: 2011 update

(2010) C. Stark et al.   NUCLEIC ACIDS RESEARCH

Enumeration of condition-dependent dense modules in protein interaction networks

(2009) Elisabeth Georgii et al.   BIOINFORMATICS

RRW: repeated random walks on genome-scale protein networks for local cluster discovery

(2009) Kathy Macropol et al.   BMC BIOINFORMATICS

Markov clustering versus affinity propagation for the partitioning of protein interaction graphs

(2009) James Vlasblom et al.   BMC BIOINFORMATICS

A core-attachment based method to detect protein complexes in PPI networks

(2009) Min Wu et al.   BMC BIOINFORMATICS

Predicting Protein Complexes from PPI Data: A Core-Attachment Approach

(2009) Henry C.M. Leung et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Bootstrapping the Interactome: Unsupervised Identification of Protein Complexes in Yeast

(2009) Caroline C. Friedel et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Community detection in graphs

(2009) Santo Fortunato   PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS

Modifying the DPClus algorithm for identifying protein complexes based on new topological structures

(2008) Min Li et al.   BMC BIOINFORMATICS