NetworkView: 3D display and analysis of protein{middle dot}RNA interaction networks

Probing the Allosteric Mechanism in Pyrrolysyl-tRNA Synthetase Using Energy-Weighted Network Formalism

(2011) Moitrayee Bhattacharyya et al.   BIOCHEMISTRY

Analyzing and visualizing residue networks of protein structures

(2011) Nadezhda T. Doncheva et al.   TRENDS IN BIOCHEMICAL SCIENCES

Exit Strategies for Charged tRNA from GluRS

(2010) Alexis Black Pyrkosz et al.   JOURNAL OF MOLECULAR BIOLOGY

The Role of L1 Stalk–tRNA Interaction in the Ribosome Elongation Cycle

(2010) Leonardo G. Trabuco et al.   JOURNAL OF MOLECULAR BIOLOGY

Induced fit, conformational selection and independent dynamic segments: an extended view of binding events

(2010) Peter Csermely et al.   TRENDS IN BIOCHEMICAL SCIENCES

Understanding hydrogen-bond patterns in proteins using network motifs

(2009) Ofer Rahat et al.   BIOINFORMATICS

Experimental and computational determination of tRNA dynamics

(2009) Rebecca W. Alexander et al.   FEBS LETTERS

Dynamical networks in tRNA:protein complexes

(2009) A. Sethi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Contact rearrangements form coupled networks from local motions in allosteric proteins

(2007) Michael D. Daily et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS