Pythoscape: a framework for generation of large protein similarity networks

Inference of Functional Properties from Large-scale Analysis of Enzyme Superfamilies

(2011) Shoshana D. Brown et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Comprehensive cluster analysis with Transitivity Clustering

(2011) Tobias Wittkop et al.   Nature Protocols

Reorganizing the protein space at the Universal Protein Resource (UniProt)

(2011)   NUCLEIC ACIDS RESEARCH

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

Glutathione Transferases Are Structural and Functional Outliers in the Thioredoxin Fold

(2009) Holly J. Atkinson et al.   BIOCHEMISTRY

SIMAP—a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters

(2009) Thomas Rattei et al.   NUCLEIC ACIDS RESEARCH

Using Sequence Similarity Networks for Visualization of Relationships Across Diverse Protein Superfamilies

(2009) Holly J. Atkinson et al.   PLoS One