PINALOG: a novel approach to align protein interaction networks—implications for complex detection and function prediction

Integrative network alignment reveals large regions of global network similarity in yeast and human

(2011) Oleksii Kuchaiev et al.   BIOINFORMATICS

The function of communities in protein interaction networks at multiple scales

(2010) Anna CF Lewis et al.   BMC Systems Biology

Topological network alignment uncovers biological function and phylogeny

(2010) O. Kuchaiev et al.   Journal of the Royal Society Interface

How and when should interactome-derived clusters be used to predict functional modules and protein function?

(2009) Jimin Song et al.   BIOINFORMATICS

Functionally guided alignment of protein interaction networks for module detection

(2009) Waqar Ali et al.   BIOINFORMATICS

Automatic Parameter Learning for Multiple Local Network Alignment

(2009) Jason Flannick et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Protein structure prediction on the Web: a case study using the Phyre server

(2009) Lawrence A Kelley et al.   Nature Protocols

The IntAct molecular interaction database in 2010

(2009) B. Aranda et al.   NUCLEIC ACIDS RESEARCH

Global alignment of multiple protein interaction networks with application to functional orthology detection

(2008) R. Singh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA