RESQUE: Network reduction using semi-Markov random walk scores for efficient querying of biological networks

RINQ: Reference-based Indexing for Network Queries

(2011) Günhan Gülsoy et al.   BIOINFORMATICS

Comparative Analysis of Biological Networks: Hidden Markov model and Markov chain-based approach

(2011) Byung-Jun Yoon et al.   IEEE SIGNAL PROCESSING MAGAZINE

Asymmetric Comparison and Querying of Biological Networks

(2011) N Ferraro et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

SubMAP: Aligning Metabolic Pathways with Subnetwork Mappings

(2011) Ferhat Ay et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Biological Network Querying Techniques: Analysis and Comparison

(2011) Valeria Fionda et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

A Novel Low-Complexity HMM Similarity Measure

(2010) Sayed Mohammad Ebrahim Sahraeian et al.   IEEE SIGNAL PROCESSING LETTERS

Querying Graphs in Protein-Protein Interactions Networks Using Feedback Vertex Set

(2010) Guillaume Blin et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Topology-Free Querying of Protein Interaction Networks

(2010) Sharon Bruckner et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

PicXAA: greedy probabilistic construction of maximum expected accuracy alignment of multiple sequences

(2010) Sayed Mohammad Ebrahim Sahraeian et al.   NUCLEIC ACIDS RESEARCH

IsoBase: a database of functionally related proteins across PPI networks

(2010) D. Park et al.   NUCLEIC ACIDS RESEARCH

The BioGRID Interaction Database: 2011 update

(2010) C. Stark et al.   NUCLEIC ACIDS RESEARCH

SIGMA: A SET-COVER-BASED INEXACT GRAPH MATCHING ALGORITHM

(2010) MISAEL MONGIOVÌ et al.   Journal of Bioinformatics and Computational Biology

IsoRankN: spectral methods for global alignment of multiple protein networks

(2009) C.-S. Liao et al.   BIOINFORMATICS

Querying Pathways in Protein Interaction Networks Based on Hidden Markov Models

(2009) Xiaoning Qian et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

QNet: A Tool for Querying Protein Interaction Networks

(2008) Banu Dost et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Human Protein Reference Database--2009 update

(2008) T. S. Keshava Prasad et al.   NUCLEIC ACIDS RESEARCH

Global alignment of multiple protein interaction networks with application to functional orthology detection

(2008) R. Singh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mining physical protein-protein interactions from the literature

(2008) Minlie Huang et al.   GENOME BIOLOGY