iBBiG: iterative binary bi-clustering of gene sets

The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups

(2012) Christina Curtis et al.   NATURE

A biclustering algorithm for extracting bit-patterns from binary datasets

(2011) Domingo S. Rodriguez-Baena et al.   BIOINFORMATICS

GCOD - GeneChip Oncology Database

(2011) Fenglong Liu et al.   BMC BIOINFORMATICS

Correlation of microarray-based breast cancer molecular subtypes and clinical outcomes: implications for treatment optimization

(2011) Kuo-Jang Kao et al.   BMC CANCER

GeneSigDB: a manually curated database and resource for analysis of gene expression signatures

(2011) A. C. Culhane et al.   NUCLEIC ACIDS RESEARCH

Integrating diverse genomic data using gene sets

(2011) Svitlana Tyekucheva et al.   GENOME BIOLOGY

Prioritizing GWAS Results: A Review of Statistical Methods and Recommendations for Their Application

(2010) Rita M. Cantor et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Meta-analysis for pathway enrichment analysis when combining multiple genomic studies

(2010) Kui Shen et al.   BIOINFORMATICS

FABIA: factor analysis for bicluster acquisition

(2010) Sepp Hochreiter et al.   BIOINFORMATICS

Co-expression module analysis reveals biological processes, genomic gain, and regulatory mechanisms associated with breast cancer progression

(2010) Zhiao Shi et al.   BMC Systems Biology

Literature-aided interpretation of gene expression data with the weighted global test

(2010) R. Jelier et al.   BRIEFINGS IN BIOINFORMATICS

Multidimensional Gene Set Analysis of Genomic Data

(2010) David Montaner et al.   PLoS One

Detailing regulatory networks through large scale data integration

(2009) C. Huttenhower et al.   BIOINFORMATICS

Potential etiologic and functional implications of genome-wide association loci for human diseases and traits

(2009) L. A. Hindorff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identifying Relationships among Genomic Disease Regions: Predicting Genes at Pathogenic SNP Associations and Rare Deletions

(2009) Soumya Raychaudhuri et al.   PLoS Genetics

Gene set enrichment analysis using linear models and diagnostics

(2008) Assaf P. Oron et al.   BIOINFORMATICS

BicOverlapper: A tool for bicluster visualization

(2008) R. Santamaria et al.   BIOINFORMATICS

The inflammatory chemokines CCL2 and CCL5 in breast cancer

(2008) Gali Soria et al.   CANCER LETTERS

ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expression

(2008) H. Parkinson et al.   NUCLEIC ACIDS RESEARCH

NCBI GEO: archive for high-throughput functional genomic data

(2008) T. Barrett et al.   NUCLEIC ACIDS RESEARCH

Gene Set Enrichment in eQTL Data Identifies Novel Annotations and Pathway Regulators

(2008) Chunlei Wu et al.   PLoS Genetics