Nonparametric Bayesian inference for perturbed and orthologous gene regulatory networks

A High-Throughput Screening System for Arabidopsis Transcription Factors and Its Application to Med25-Dependent Transcriptional Regulation

(2011) Bin Ou et al.   Molecular Plant

High-Resolution Temporal Profiling of Transcripts during Arabidopsis Leaf Senescence Reveals a Distinct Chronology of Processes and Regulation

(2011) E. Breeze et al.   PLANT CELL

TEMPORAL GRAPHICAL MODELS FOR CROSS-SPECIES GENE REGULATORY NETWORK DISCOVERY

(2011) YAN LIU et al.   Journal of Bioinformatics and Computational Biology

A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series

(2010) Oliver Stegle et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Efficient Yeast One-/Two-Hybrid Screening Using a Library Composed Only of Transcription Factors in Arabidopsis thaliana

(2010) Nobutaka Mitsuda et al.   PLANT AND CELL PHYSIOLOGY

Towards a Rigorous Assessment of Systems Biology Models: The DREAM3 Challenges

(2010) Robert J. Prill et al.   PLoS One

Revealing strengths and weaknesses of methods for gene network inference

(2010) D. Marbach et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Learning gene regulatory networks from gene expression measurements using non-parametric molecular kinetics

(2009) Tarmo Äijö et al.   BIOINFORMATICS

Generating Realistic In Silico Gene Networks for Performance Assessment of Reverse Engineering Methods

(2009) Daniel Marbach et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

DEAR1, a transcriptional repressor of DREB protein that mediates plant defense and freezing stress responses in Arabidopsis

(2009) Tomokazu Tsutsui et al.   JOURNAL OF PLANT RESEARCH

ChIP–seq: advantages and challenges of a maturing technology

(2009) Peter J. Park   NATURE REVIEWS GENETICS

Computational approaches to the integration of gene expression, ChIP-chip and sequence data in the inference of gene regulatory networks

(2009) Emma J. Cooke et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

GENE REGULATORY NETWORK RECONSTRUCTION BY BAYESIAN INTEGRATION OF PRIOR KNOWLEDGE AND/OR DIFFERENT EXPERIMENTAL CONDITIONS

(2008) ADRIANO V. WERHLI et al.   Journal of Bioinformatics and Computational Biology