Mining and integration of pathway diagrams from imaging data

BiologicalNetworks 2.0 - an integrative view of genome biology data

(2011) Sergey Kozhenkov et al.   BMC BIOINFORMATICS

BiologicalNetworks - tools enabling the integration of multi-scale data for the host-pathogen studies

(2011) Sergey Kozhenkov et al.   BMC Systems Biology

Semantic integration of data on transcriptional regulation

(2010) Michael Baitaluk et al.   BIOINFORMATICS

Inference of RhoGAP/GTPase regulation using single-cell morphological data from a combinatorial RNAi screen

(2010) O. Nir et al.   GENOME RESEARCH

Pathway Commons, a web resource for biological pathway data

(2010) E. G. Cerami et al.   NUCLEIC ACIDS RESEARCH

Figure mining for biomedical research

(2009) R. Rodriguez-Esteban et al.   BIOINFORMATICS

RNAiCut: automated detection of significant genes from functional genomic screens

(2009) Irene M Kaplow et al.   NATURE METHODS

KEGG for representation and analysis of molecular networks involving diseases and drugs

(2009) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Mining Biological Pathways Using WikiPathways Web Services

(2009) Thomas Kelder et al.   PLoS One

Yale Image Finder (YIF): a new search engine for retrieving biomedical images

(2008) S. Xu et al.   BIOINFORMATICS

Bioimage informatics: a new area of engineering biology

(2008) Hanchuan Peng   BIOINFORMATICS

PID: the Pathway Interaction Database

(2008) Carl F. Schaefer et al.   NUCLEIC ACIDS RESEARCH

Identification of Host Proteins Required for HIV Infection Through a Functional Genomic Screen

(2008) Abraham L. Brass et al.   SCIENCE