Targeted retrieval of gene expression measurements using regulatory models

Data-driven information retrieval in heterogeneous collections of transcriptomics data links SIM2s to malignant pleural mesothelioma

(2011) José Caldas et al.   BIOINFORMATICS

Content-based microarray search using differential expression profiles

(2011) Jesse M Engreitz et al.   BMC BIOINFORMATICS

PILGRM: an interactive data-driven discovery platform for expert biologists

(2011) C. S. Greene et al.   NUCLEIC ACIDS RESEARCH

Inferring dynamic gene networks under varying conditions for transcriptomic network comparison

(2010) Teppei Shimamura et al.   BIOINFORMATICS

Cross-species queries of large gene expression databases

(2010) Hai-Son Le et al.   BIOINFORMATICS

Global modeling of transcriptional responses in interaction networks

(2010) Leo Lahti et al.   BIOINFORMATICS

A global map of human gene expression

(2010) Margus Lukk et al.   NATURE BIOTECHNOLOGY

Bayesian approach to transforming public gene expression repositories into disease diagnosis databases

(2010) H. Huang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets

(2010) Silpa Suthram et al.   PLoS Computational Biology

Probabilistic retrieval and visualization of biologically relevant microarray experiments

(2009) J. Caldas et al.   BIOINFORMATICS

GEM-TREND: a web tool for gene expression data mining toward relevant network discovery

(2009) Chunlai Feng et al.   BMC GENOMICS

Inferring sparse Gaussian graphical models with latent structure

(2009) Christophe Ambroise et al.   Electronic Journal of Statistics

Functional analysis of an Arabidopsis heat-shock transcription factor HsfA3 in the transcriptional cascade downstream of the DREB2A stress-regulatory system

(2008) Takumi Yoshida et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Assessing the functional structure of genomic data

(2008) C. Huttenhower et al.   BIOINFORMATICS

GEOmetadb: powerful alternative search engine for the Gene Expression Omnibus

(2008) Y. Zhu et al.   BIOINFORMATICS

ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expression

(2008) H. Parkinson et al.   NUCLEIC ACIDS RESEARCH