HTSanalyzeR: an R/Bioconductor package for integrated network analysis of high-throughput screens

BioNet: an R-Package for the functional analysis of biological networks

(2010) D. Beisser et al.   BIOINFORMATICS

web cellHTS2: A web-application for the analysis of high-throughput screening data

(2010) Oliver Pelz et al.   BMC BIOINFORMATICS

Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation

(2010) Daniele Merico et al.   PLoS One

How to Understand the Cell by Breaking It: Network Analysis of Gene Perturbation Screens

(2010) Florian Markowetz   PLoS Computational Biology

RNAither, an automated pipeline for the statistical analysis of high-throughput RNAi screens

(2009) N. Rieber et al.   BIOINFORMATICS

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Analyzing gene perturbation screens with nested effects models in R and bioconductor

(2008) H. Frohlich et al.   BIOINFORMATICS