APCluster: an R package for affinity propagation clustering

Complex Networks Govern Coiled-Coil Oligomerization – Predicting and Profiling by Means of a Machine Learning Approach

(2011) Carsten C. Mahrenholz et al.   MOLECULAR & CELLULAR PROTEOMICS

MODEVO: exploring modularity and evolution of protein interaction networks

(2010) M. Wozniak et al.   BIOINFORMATICS

Detecting microarray data supported microRNA-mRNA interactions

(2010) Hui Liu et al.   International Journal of Data Mining and Bioinformatics

A New Clustering of Antibody CDR Loop Conformations

(2010) Benjamin North et al.   JOURNAL OF MOLECULAR BIOLOGY

iPARTS: an improved tool of pairwise alignment of RNA tertiary structures

(2010) Chih-Wei Wang et al.   NUCLEIC ACIDS RESEARCH

Using Affinity Propagation Combined Post-Processing to Cluster Protein Sequences

(2010) Fan Yang et al.   PROTEIN AND PEPTIDE LETTERS

TASSER_low-zsc: An approach to improve structure prediction using low z-score-ranked templates

(2010) Shashi B. Pandit et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Temporal clustering by affinity propagation reveals transcriptional modules in Arabidopsis thaliana

(2009) S. J. Kiddle et al.   BIOINFORMATICS

Markov clustering versus affinity propagation for the partitioning of protein interaction graphs

(2009) James Vlasblom et al.   BMC BIOINFORMATICS

A Poisson-based adaptive affinity propagation clustering for SAGE data

(2009) DongMing Tang et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Arena3D: visualization of biological networks in 3D

(2008) Georgios A Pavlopoulos et al.   BMC Systems Biology