Protein stability: a single recorded mutation aids in predicting the effects of other mutations in the same amino acid site

Protein Thermostability Calculations Using Alchemical Free Energy Simulations

(2010) Daniel Seeliger et al.   BIOPHYSICAL JOURNAL

Predicting changes in protein thermostability brought about by single- or multi-site mutations

(2010) Jian Tian et al.   BMC BIOINFORMATICS

MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data

(2010) Gilad Wainreb et al.   NUCLEIC ACIDS RESEARCH

AUTO-MUTE: web-based tools for predicting stability changes in proteins due to single amino acid replacements

(2010) M. Masso et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Fast and accurate predictions of protein stability changes upon mutations using statistical potentials and neural networks: PoPMuSiC-2.0

(2009) Yves Dehouck et al.   BIOINFORMATICS

Correlating protein function and stability through the analysis of single amino acid substitutions

(2009) Yana Bromberg et al.   BMC BIOINFORMATICS

Prediction of amyloid fibril-forming segments based on a support vector machine

(2009) Jian Tian et al.   BMC BIOINFORMATICS

Infrastructure for the life sciences: design and implementation of the UniProt website

(2009) Eric Jain et al.   BMC BIOINFORMATICS

The Universal Protein Resource (UniProt) in 2010

(2009)   NUCLEIC ACIDS RESEARCH

Assessing computational methods for predicting protein stability upon mutation: good on average but not in the details

(2009) V. Potapov et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Inferring Stabilizing Mutations from Protein Phylogenies: Application to Influenza Hemagglutinin

(2009) Jesse D. Bloom et al.   PLoS Computational Biology

Predicting protein thermostability changes from sequence upon multiple mutations

(2008) L. Montanucci et al.   BIOINFORMATICS

Predicting free energy changes using structural ensembles

(2008) Alexander Benedix et al.   NATURE METHODS

The ConSurf-DB: pre-calculated evolutionary conservation profiles of protein structures

(2008) Ofir Goldenberg et al.   NUCLEIC ACIDS RESEARCH

Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction

(2002) Hongyi Zhou et al.   PROTEIN SCIENCE