All-atom knowledge-based potential for RNA structure prediction and assessment

Atomic accuracy in predicting and designing noncanonical RNA structure

(2010) Rhiju Das et al.   NATURE METHODS

Statistical potentials for fold assessment

(2010) Francisco Melo et al.   PROTEIN SCIENCE

New information content in RNA base pairing deduced from quantitative analysis of high-resolution structures

(2009) Wilma K. Olson et al.   METHODS

SARA: a server for function annotation of RNA structures

(2009) E. Capriotti et al.   NUCLEIC ACIDS RESEARCH

Web 3DNA--a web server for the analysis, reconstruction, and visualization of three-dimensional nucleic-acid structures

(2009) G. Zheng et al.   NUCLEIC ACIDS RESEARCH

Effective knowledge-based potentials

(2009) Evandro Ferrada et al.   PROTEIN SCIENCE

Coarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filters

(2009) M. A. Jonikas et al.   RNA

RNA structure alignment by a unit-vector approach

(2008) E. Capriotti et al.   BIOINFORMATICS

iFoldRNA: three-dimensional RNA structure prediction and folding

(2008) Shantanu Sharma et al.   BIOINFORMATICS

Computational RNA Structure Prediction

(2008) Marc Marti-Renom et al.   Current Bioinformatics

Tertiary Interactions Determine the Accuracy of RNA Folding

(2008) Seema Chauhan et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data

(2008) Marc Parisien et al.   NATURE

3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures

(2008) Xiang-Jun Lu et al.   Nature Protocols