TFRank: network-based prioritization of regulatory associations underlying transcriptional responses

FUS-CREB3L2/L1-Positive Sarcomas Show a Specific Gene Expression Profile with Upregulation of CD24 and FOXL1

(2011) E. Moller et al.   CLINICAL CANCER RESEARCH

A genome-wide screen identifies yeast genes required for protection against or enhanced cytotoxicity of the antimalarial drug quinine

(2011) Sandra C. dos Santos et al.   MOLECULAR GENETICS AND GENOMICS

cAMP-response-element-binding protein positively regulates breast cancer metastasis and subsequent bone destruction

(2010) Jieun Son et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Regulatory impact factors: unraveling the transcriptional regulation of complex traits from expression data

(2010) Antonio Reverter et al.   BIOINFORMATICS

Polymorphisms in NFkB, PXR, LXR and risk of colorectal cancer in a prospective study of Danes

(2010) Vibeke Andersen et al.   BMC CANCER

Genome-wide transcription factor binding site/promoter databases for the analysis of gene sets and co-occurrence of transcription factor binding motifs

(2010) Srinivas Veerla et al.   BMC GENOMICS

Leptin pro-angiogenic signature in breast cancer is linked to IL-1 signalling

(2010) W Zhou et al.   BRITISH JOURNAL OF CANCER

Genome-wide identification of Saccharomyces cerevisiae genes required for tolerance to acetic acid

(2010) Nuno P Mira et al.   Microbial Cell Factories

Refining current knowledge on the yeast FLR1 regulatory network by combined experimental and computational approaches

(2010) M. C. Teixeira et al.   Molecular BioSystems

Myeloid Zinc Finger 1 Induces Migration, Invasion, and In vivo Metastasis through Axl Gene Expression in Solid Cancer

(2010) G. Mudduluru et al.   MOLECULAR CANCER RESEARCH

Intercalation of a new tier of transcription regulation into an ancient circuit

(2010) Lauren N. Booth et al.   NATURE

Transcription factor regulation can be accurately predicted from the presence of target gene signatures in microarray gene expression data

(2010) Ahmed Essaghir et al.   NUCLEIC ACIDS RESEARCH

YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface

(2010) D. Abdulrehman et al.   NUCLEIC ACIDS RESEARCH

Genomic Expression Program Involving the Haa1p-Regulon in Saccharomyces cerevisiae Response to Acetic Acid

(2010) Nuno P. Mira et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Transcriptomic Profiling of the Saccharomyces cerevisiae Response to Quinine Reveals a Glucose Limitation Response Attributable to Drug-Induced Inhibition of Glucose Uptake

(2009) S. C. dos Santos et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Death-associated protein 3 is overexpressed in human thyroid oncocytic tumours

(2009) C Jacques et al.   BRITISH JOURNAL OF CANCER

Gis1 is required for transcriptional reprogramming of carbon metabolism and the stress response during transition into stationary phase in yeast

(2009) N. Zhang et al.   MICROBIOLOGY-SGM

Myocardin-related transcription factors and SRF are required for cytoskeletal dynamics and experimental metastasis

(2009) Souhila Medjkane et al.   NATURE CELL BIOLOGY

Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes

(2009) Federico Zambelli et al.   NUCLEIC ACIDS RESEARCH

PASTAA: identifying transcription factors associated with sets of co-regulated genes

(2008) Helge G. Roider et al.   BIOINFORMATICS

CORE_TF: a user-friendly interface to identify evolutionary conserved transcription factor binding sites in sets of co-regulated genes

(2008) Matthew S Hestand et al.   BMC BIOINFORMATICS

Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data

(2008) Yuji Zhang et al.   BMC BIOINFORMATICS

Identification of ETS-like transcription factor 4 as a novel androgen receptor target in prostate cancer cells

(2008) H Makkonen et al.   ONCOGENE

Asap: A Framework for Over-Representation Statistics for Transcription Factor Binding Sites

(2008) Troels T. Marstrand et al.   PLoS One

An Integrated Approach Identifies Nhlh1 and Insm1 as Sonic Hedgehog-regulated Genes in Developing Cerebellum and Medulloblastoma

(2008) Enrico De Smaele et al.   NEOPLASIA