An ensemble biclustering approach for querying gene expression compendia with experimental lists

Query-based biclustering of gene expression data using Probabilistic Relational Models

(2011) Hui Zhao et al.   BMC BIOINFORMATICS

Modular analysis of gene expression data with R

(2010) G. Csardi et al.   BIOINFORMATICS

Expander: from expression microarrays to networks and functions

(2010) Igor Ulitsky et al.   Nature Protocols

ViTraM: visualization of transcriptional modules

(2009) H. Sun et al.   BIOINFORMATICS

Extracting the multiscale backbone of complex weighted networks

(2009) M. A. Serrano et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mining for coexpression across hundreds of datasets using novel rank aggregation and visualization methods

(2009) Priit Adler et al.   GENOME BIOLOGY

DISTILLER: a data integration framework to reveal condition dependency of complex regulons in Escherichia coli

(2009) Karen Lemmens et al.   GENOME BIOLOGY

EcoCyc: A comprehensive view of Escherichia coli biology

(2008) I. M. Keseler et al.   NUCLEIC ACIDS RESEARCH