Succinct data structures for assembling large genomes

Structural variation analysis with strobe reads

(2010) A. Ritz et al.   BIOINFORMATICS

Assembly algorithms for next-generation sequencing data

(2010) Jason R. Miller et al.   GENOMICS

Parallel short sequence assembly of transcriptomes

(2009) Benjamin G Jackson et al.   BMC BIOINFORMATICS

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

Computation of Rank and Select Functions on Hierarchical Binary String and Its Application to Genome Mapping Problems for Short-Read DNA Sequences

(2009) Kouichi Kimura et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Dynamic entropy-compressed sequences and full-text indexes

(2008) Veli Mäkinen et al.   ACM Transactions on Algorithms

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Accurate whole human genome sequencing using reversible terminator chemistry

(2008) David R. Bentley et al.   NATURE