Journal
BIOINFORMATICS
Volume 27, Issue 24, Pages 3427-3429Publisher
OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btr578
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Funding
- NIH [DP2-OD007417]
- NSF [DBI 08-45823, DBI 09-60583]
- Direct For Biological Sciences
- Div Of Biological Infrastructure [0845823, 0960583] Funding Source: National Science Foundation
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Results: We developed a Personal Genome Editor (perEditor) that changes the reference human genome (NCBI36/hg18) into an individual genome, taking into account single nucleotide polymorphisms (SNPs), insertions and deletions, copy number variation, and chromosomal rearrangements. perEditor outputs two alleles (maternal, paternal) of the individual genome that is ready for mapping ChIP-seq and RNA-seq reads, and enabling the analyses of allele specific binding, chromatin structure and gene expression.
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