B-SOLANA: an approach for the analysis of two-base encoding bisulfite sequencing data

MethylCoder: software pipeline for bisulfite-treated sequences

(2011) B. Pedersen et al.   BIOINFORMATICS

Increased methylation variation in epigenetic domains across cancer types

(2011) Kasper Daniel Hansen et al.   NATURE GENETICS

An alignment algorithm for bisulfite sequencing using the Applied Biosystems SOLiD System

(2010) Brian D. Ondov et al.   BIOINFORMATICS

The DNA methylome

(2010) Mattia Pelizzola et al.   FEBS LETTERS

Quantitative comparison of genome-wide DNA methylation mapping technologies

(2010) Christoph Bock et al.   NATURE BIOTECHNOLOGY

Whole Methylome Analysis by Ultra-Deep Sequencing Using Two-Base Encoding

(2010) Christina A. Bormann Chung et al.   PLoS One

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Human DNA methylomes at base resolution show widespread epigenomic differences

(2009) Ryan Lister et al.   NATURE

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY