PepCrawler: a fast RRT-based algorithm for high-resolution refinement and binding affinity estimation of peptide inhibitors

Mechanism of action of the HIV-1 integrase inhibitory peptide LEDGF 361–370

(2010) Zvi Hayouka et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Are Scoring Functions in Protein−Protein Docking Ready To Predict Interactomes? Clues from a Novel Binding Affinity Benchmark

(2010) Panagiotis L. Kastritis et al.   JOURNAL OF PROTEOME RESEARCH

Can self-inhibitory peptides be derived from the interfaces of globular protein-protein interactions?

(2010) Nir London et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

The Structural Basis of Peptide-Protein Binding Strategies

(2010) Nir London et al.   STRUCTURE

A SPR strategy for high-throughput ligand screenings based on synthetic peptides mimicking a selected subdomain of the target protein: A proof of concept on HER2 receptor

(2009) Luca Monfregola et al.   BIOORGANIC & MEDICINAL CHEMISTRY

Peptidic modulators of protein-protein interactions: Progress and challenges in computational design

(2009) Mor Rubinstein et al.   BIOPOLYMERS

The road less traveled: modulating signal transduction enzymes by inhibiting their protein–protein interactions

(2009) Michelle R Arkin et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Peptides in the treatment of AIDS

(2009) Fred Naider et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Structure-based Design of High Affinity Peptides Inhibiting the Interaction of p53 with MDM2 and MDMX

(2009) Jason Phan et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

All-Atom Monte Carlo Approach to Protein–Peptide Binding

(2009) Iskra Staneva et al.   JOURNAL OF MOLECULAR BIOLOGY

Structure-Based Prediction of the Saccharomyces cerevisiae SH3–Ligand Interactions

(2009) Gregorio Fernandez-Ballester et al.   JOURNAL OF MOLECULAR BIOLOGY

DynaDock: A new molecular dynamics-based algorithm for protein-peptide docking including receptor flexibility

(2009) Iris Antes   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Identification of Structural Mechanisms of HIV-1 Protease Specificity Using Computational Peptide Docking: Implications for Drug Resistance

(2009) Sidhartha Chaudhury et al.   STRUCTURE

Approved Drug Mimics of Short Peptide Ligands from Protein Interaction Motifs

(2008) Laavanya Parthasarathi et al.   Journal of Chemical Information and Modeling