Improved side-chain modeling by coupling clash-detection guided iterative search with rotamer relaxation

Beyond rotamers: a generative, probabilistic model of side chains in proteins

(2010) Tim Harder et al.   BMC BIOINFORMATICS

Improved prediction of protein side-chain conformations with SCWRL4

(2009) Georgii G. Krivov et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Improving physical realism, stereochemistry, and side-chain accuracy in homology modeling: Four approaches that performed well in CASP8

(2009) Elmar Krieger et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

OPUS-Rota: A fast and accurate method for side-chain modeling

(2008) Mingyang Lu et al.   PROTEIN SCIENCE

OPUS-PSP: An Orientation-dependent Statistical All-atom Potential Derived from Side-chain Packing

(2007) Mingyang Lu et al.   JOURNAL OF MOLECULAR BIOLOGY

Side-chain modeling with an optimized scoring function

(2002) Shide Liang et al.   PROTEIN SCIENCE