Prototypes of elementary functional loops unravel evolutionary connections between protein functions

Domain assignment for protein structures using a consensus approach: Characterization and analysis

(2010) Susan Jones et al.   PROTEIN SCIENCE

CORAL: aligning conserved core regions across domain families

(2009) Jessica H. Fong et al.   BIOINFORMATICS

The Crystal Structures of the Open and Catalytically Competent Closed Conformation ofEscherichia coliGlycogen Synthase

(2009) Fang Sheng et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Understanding the Functional Roles of Amino Acid Residues in Enzyme Catalysis

(2009) Gemma L. Holliday et al.   JOURNAL OF MOLECULAR BIOLOGY

Missing in action: enzyme functional annotations in biological databases

(2009) Nicholas Furnham et al.   Nature Chemical Biology

PROSITE, a protein domain database for functional characterization and annotation

(2009) Christian J. A. Sigrist et al.   NUCLEIC ACIDS RESEARCH

Nature of the protein universe

(2009) M. Levitt   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Protein Dynamism and Evolvability

(2009) N. Tokuriki et al.   SCIENCE

Advances in laboratory evolution of enzymes

(2008) Shimon Bershtein et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

PSI-BLAST pseudocounts and the minimum description length principle

(2008) Stephen F. Altschul et al.   NUCLEIC ACIDS RESEARCH

GenBank

(2008) D. A. Benson et al.   NUCLEIC ACIDS RESEARCH

CDD: specific functional annotation with the Conserved Domain Database

(2008) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Detecting evolutionary relationships across existing fold space, using sequence order-independent profile-profile alignments

(2008) L. Xie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA