Cross-hybridization modeling on Affymetrix exon arrays

SeqMap: mapping massive amount of oligonucleotides to the genome

(2008) H. Jiang et al.   BIOINFORMATICS

SOAP: short oligonucleotide alignment program

(2008) R. Li et al.   BIOINFORMATICS

Using quality scores and longer reads improves accuracy of Solexa read mapping

(2008) Andrew D Smith et al.   BMC BIOINFORMATICS

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Comparing whole genomes using DNA microarrays

(2008) David Gresham et al.   NATURE REVIEWS GENETICS

MADS: A new and improved method for analysis of differential alternative splicing by exon-tiling microarrays

(2008) Y. Xing et al.   RNA