Image analysis in fluorescence microscopy: Bacterial dynamics as a case study

Super-resolution imaging prompts re-thinking of cell biology mechanisms

(2012) Sinem Saka et al.   BIOESSAYS

Bridging Structure and Process in Developmental Biology through New Imaging Technologies

(2011) Jennifer Lippincott-Schwartz   DEVELOPMENTAL CELL

Functioning Nanomachines Seen in Real-Time in Living Bacteria Using Single-Molecule and Super-Resolution Fluorescence Imaging

(2011) Sheng-Wen Chiu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

High-throughput, subpixel precision analysis of bacterial morphogenesis and intracellular spatio-temporal dynamics

(2011) Oleksii Sliusarenko et al.   MOLECULAR MICROBIOLOGY

Central dogma at the single-molecule level in living cells

(2011) Gene-Wei Li et al.   NATURE

An active role for machine learning in drug development

(2011) Robert F Murphy   Nature Chemical Biology

The bacterial actin MreB rotates, and rotation depends on cell-wall assembly

(2011) S. van Teeffelen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Motor-driven intracellular transport powers bacterial gliding motility

(2011) M. Sun et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Processive Movement of MreB-Associated Cell Wall Biosynthetic Complexes in Bacteria

(2011) J. Dominguez-Escobar et al.   SCIENCE

Coupled, Circumferential Motions of the Cell Wall Synthesis Machinery and MreB Filaments in B. subtilis

(2011) E. C. Garner et al.   SCIENCE

The Bacterial Cytoskeleton

(2010) Matthew T. Cabeen et al.   Annual Review of Genetics

Use of Fluorescence Microscopy to Study Intracellular Signaling in Bacteria

(2010) David Kentner et al.   Annual Review of Microbiology

Mobility of Cytoplasmic, Membrane, and DNA-Binding Proteins in Escherichia coli

(2010) Mohit Kumar et al.   BIOPHYSICAL JOURNAL

Pushing and Pulling in Prokaryotic DNA Segregation

(2010) Kenn Gerdes et al.   CELL

Breaking the Diffraction Barrier: Super-Resolution Imaging of Cells

(2010) Bo Huang et al.   CELL

Microfluidic approaches for systems and synthetic biology

(2010) Nicolas Szita et al.   CURRENT OPINION IN BIOTECHNOLOGY

A guide to super-resolution fluorescence microscopy

(2010) Lothar Schermelleh et al.   JOURNAL OF CELL BIOLOGY

Fluorescent proteins at a glance

(2010) G.-J. Kremers et al.   JOURNAL OF CELL SCIENCE

Spatial organization of the flow of genetic information in bacteria

(2010) Paula Montero Llopis et al.   NATURE

Functional roles for noise in genetic circuits

(2010) Avigdor Eldar et al.   NATURE

A spindle-like apparatus guides bacterial chromosome segregation

(2010) Jerod L. Ptacin et al.   NATURE CELL BIOLOGY

Bacterial Chromosomal Loci Move Subdiffusively through a Viscoelastic Cytoplasm

(2010) Stephanie C. Weber et al.   PHYSICAL REVIEW LETTERS

Caulobacter chromosome segregation is an ordered multistep process

(2010) C. W. Shebelut et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-throughput identification of protein localization dependency networks

(2010) B. Christen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Processivity of peptidoglycan synthesis provides a built-in mechanism for the robustness of straight-rod cell morphology

(2010) O. Sliusarenko et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fast live simultaneous multiwavelength four-dimensional optical microscopy

(2010) P. M. Carlton et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Signal-dependent turnover of the bacterial flagellar switch protein FliM

(2010) N. J. Delalez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

(2010) Y. Taniguchi et al.   SCIENCE

Circadian Gating of the Cell Cycle Revealed in Single Cyanobacterial Cells

(2010) Q. Yang et al.   SCIENCE

Automated Quantitative Live Cell Fluorescence Microscopy

(2010) M. Fero et al.   Cold Spring Harbor Perspectives in Biology

Studying the Dynamics of Flagella in Multicellular Communities of Escherichia coli by Using Biarsenical Dyes

(2009) M. F. Copeland et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Architecture-Dependent Noise Discriminates Functionally Analogous Differentiation Circuits

(2009) Tolga Çağatay et al.   CELL

The dynamic nature of the bacterial cytoskeleton

(2009) Purva Vats et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

New fluorescence microscopy methods for microbiology: sharper, faster, and quantitative

(2009) Zemer Gitai   CURRENT OPINION IN MICROBIOLOGY

Patch-Based Nonlocal Functional for Denoising Fluorescence Microscopy Image Sequences

(2009) J. Boulanger et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Using movies to analyse gene circuit dynamics in single cells

(2009) James C. W. Locke et al.   NATURE REVIEWS MICROBIOLOGY

Scoring diverse cellular morphologies in image-based screens with iterative feedback and machine learning

(2009) Thouis R. Jones et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Subcellular localization of a bacterial regulatory RNA

(2009) J. H. Russell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantitative genome-scale analysis of protein localization in an asymmetric bacterium

(2009) J. N. Werner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Why and How Bacteria Localize Proteins

(2009) L. Shapiro et al.   SCIENCE

Tracking in cell and developmental biology

(2009) Erik Meijering et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Self-Organization of the Escherichia coli Chemotaxis Network Imaged with Super-Resolution Light Microscopy

(2009) Derek Greenfield et al.   PLOS BIOLOGY

Single-Molecule Approach to Molecular Biology in Living Bacterial Cells

(2008) X. Sunney Xie et al.   Annual Review of Biophysics

The Organization of the Bacterial Genome

(2008) Eduardo P.C. Rocha   Annual Review of Genetics

Bioimage informatics: a new area of engineering biology

(2008) Hanchuan Peng   BIOINFORMATICS

Investigating Intracellular Dynamics of FtsZ Cytoskeleton with Photoactivation Single-Molecule Tracking

(2008) Lili Niu et al.   BIOPHYSICAL JOURNAL

CellProfiler Analyst: data exploration and analysis software for complex image-based screens

(2008) Thouis R Jones et al.   BMC BIOINFORMATICS

A Polymeric Protein Anchors the Chromosomal Origin/ParB Complex at a Bacterial Cell Pole

(2008) Grant R. Bowman et al.   CELL

The bacterial cytoskeleton

(2008) Joe Pogliano   CURRENT OPINION IN CELL BIOLOGY

Robust single-particle tracking in live-cell time-lapse sequences

(2008) Khuloud Jaqaman et al.   NATURE METHODS

High-density mapping of single-molecule trajectories with photoactivated localization microscopy

(2008) Suliana Manley et al.   NATURE METHODS

Super-resolution imaging in live Caulobacter crescentus cells using photoswitchable EYFP

(2008) Julie S Biteen et al.   NATURE METHODS

Fluorescent probes for super-resolution imaging in living cells

(2008) Marta Fernández-Suárez et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Shape of nonseptatedEscherichia coliis asymmetric

(2008) E. Itan et al.   PHYSICAL REVIEW E

Bet-hedging and epigenetic inheritance in bacterial cell development

(2008) J.-W. Veening et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stochasticity and Cell Fate

(2008) R. Losick et al.   SCIENCE

Escherichia coli and its chromosome

(2008) Rodrigo Reyes-Lamothe et al.   TRENDS IN MICROBIOLOGY

PSICIC: Noise and Asymmetry in Bacterial Division Revealed by Computational Image Analysis at Sub-Pixel Resolution

(2008) Jonathan M. Guberman et al.   PLoS Computational Biology

Getting organized — how bacterial cells move proteins and DNA

(2007) Martin Thanbichler et al.   NATURE REVIEWS MICROBIOLOGY