Toward the virtual cell: Automated approaches to building models of subcellular organization “learned” from microscopy images

STEPS: efficient simulation of stochastic reaction–diffusion models in realistic morphologies

(2012) Iain Hepburn et al.   BMC Systems Biology

Computer Vision in Cell Biology

(2011) Gaudenz Danuser   CELL

Image-derived, three-dimensional generative models of cellular organization

(2011) Tao Peng et al.   CYTOMETRY PART A

Continuum simulations of biomembrane dynamics and the importance of hydrodynamic effects

(2011) Frank L. H. Brown   QUARTERLY REVIEWS OF BIOPHYSICS

Growth strain-induced wrinkled membrane morphology of white blood cells

(2011) Lifeng Wang et al.   Soft Matter

Symmetry, Stability, and Reversibility Properties of Idealized Confined Microtubule Cytoskeletons

(2010) V.I. Maly et al.   BIOPHYSICAL JOURNAL

Communicating subcellular distributions

(2010) Robert F. Murphy   CYTOMETRY PART A

Simulation of cell motility that reproduces the force-velocity relationship

(2010) C. H. Schreiber et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Modelling Vesicular Release at Hippocampal Synapses

(2010) Suhita Nadkarni et al.   PLoS Computational Biology

Microtubule Depolymerization by the Kinesin-8 Motor Kip3p: A Mathematical Model

(2009) L.E. Hough et al.   BIOPHYSICAL JOURNAL

Continuous model for microtubule dynamics with catastrophe, rescue, and nucleation processes

(2009) Peter Hinow et al.   PHYSICAL REVIEW E

Cytoskeleton mediated effective elastic properties of model red blood cell membranes

(2008) Rui Zhang et al.   JOURNAL OF CHEMICAL PHYSICS

A Framework for the Automated Analysis of Subcellular Patterns in Human Protein Atlas Images

(2008) Justin Newberg et al.   JOURNAL OF PROTEOME RESEARCH

Mechanism of shape determination in motile cells

(2008) Kinneret Keren et al.   NATURE

Deformation-based nuclear morphometry: Capturing nuclear shape variation in HeLa cells

(2007) Gustavo K. Rohde et al.   CYTOMETRY PART A