Evolution of eukaryotic genome architecture: Insights from the study of a rapidly evolving metazoan, Oikopleura dioica

2R and remodeling of vertebrate signal transduction engine

(2011) Lukasz Huminiecki et al.   BMC BIOLOGY

Non-coding RNAs as regulators of embryogenesis

(2011) Andrea Pauli et al.   NATURE REVIEWS GENETICS

Variable Tandem Repeats Accelerate Evolution of Coding and Regulatory Sequences

(2010) Rita Gemayel et al.   Annual Review of Genetics

Genomic neighbourhood and the regulation of gene expression

(2010) Subhajyoti De et al.   CURRENT OPINION IN CELL BIOLOGY

Small RNA-Mediated Quiescence of Transposable Elements in Animals

(2010) Kuniaki Saito et al.   DEVELOPMENTAL CELL

Rationally designed logic integration of regulatory signals in mammalian cells

(2010) Madeleine Leisner et al.   Nature Nanotechnology

Scaling up synthetic gene circuits

(2010) Guilhem Chalancon et al.   Nature Nanotechnology

Alternative splicing and evolution: diversification, exon definition and function

(2010) Hadas Keren et al.   NATURE REVIEWS GENETICS

Synthetic biology: applications come of age

(2010) Ahmad S. Khalil et al.   NATURE REVIEWS GENETICS

SUPERFAMILY 1.75 including a domain-centric gene ontology method

(2010) D. A. de Lima Morais et al.   NUCLEIC ACIDS RESEARCH

Analysis of Gene Order Conservation in Eukaryotes Identifies Transcriptionally and Functionally Linked Genes

(2010) Marcela Dávila López et al.   PLoS One

Plasticity of Animal Genome Architecture Unmasked by Rapid Evolution of a Pelagic Tunicate

(2010) F. Denoeud et al.   SCIENCE

Genomic and structural aspects of protein evolution

(2009) Cyrus Chothia et al.   BIOCHEMICAL JOURNAL

RNA regulation of epigenetic processes

(2009) John S. Mattick et al.   BIOESSAYS

T-REKS: identification of Tandem REpeats in sequences with a K-meanS based algorithm

(2009) Julien Jorda et al.   BIOINFORMATICS

Evolution and Functions of Long Noncoding RNAs

(2009) Chris P. Ponting et al.   CELL

The impact of genomic neighborhood on the evolution of human and chimpanzee transcriptome

(2009) S. De et al.   GENOME RESEARCH

Evolution of gene function and regulatory control after whole-genome duplication: Comparative analyses in vertebrates

(2009) K. S. Kassahn et al.   GENOME RESEARCH

Culture optimization for the emergent zooplanktonic model organism Oikopleura dioica

(2009) J.-M. Bouquet et al.   JOURNAL OF PLANKTON RESEARCH

Synthetic biology: exploring and exploiting genetic modularity through the design of novel biological networks

(2009) Christina M. Agapakis et al.   Molecular BioSystems

Insights into Branch Nucleophile Positioning and Activation from an Orthogonal Pre-mRNA Splicing System in Yeast

(2009) Duncan J. Smith et al.   MOLECULAR CELL

Genome engineering

(2009) Peter A Carr et al.   NATURE BIOTECHNOLOGY

Next-generation synthetic gene networks

(2009) Timothy K Lu et al.   NATURE BIOTECHNOLOGY

Long non-coding RNAs: insights into functions

(2009) Tim R. Mercer et al.   NATURE REVIEWS GENETICS

The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs

(2009) Alain Jacquier   NATURE REVIEWS GENETICS

Synthesis of orthogonal transcription-translation networks

(2009) W. An et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Genetic Signatures of Noncoding RNAs

(2009) John S. Mattick   PLoS Genetics

Synthetic biology through biomolecular design and engineering

(2008) K CHANNON et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Evolution of genome architecture

(2008) Eugene V. Koonin   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

Altered miRNA Repertoire in the Simplified Chordate, Oikopleura dioica

(2008) X. Fu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Embryology of a planktonic tunicate reveals traces of sessility

(2008) T. Stach et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA