Structural modeling and molecular simulation analysis of HvAP2/EREBP from barley

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(2018)   JOURNAL OF COMPUTATIONAL CHEMISTRY

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(2018)   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

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(2016)   PLANT JOURNAL

Natural allelic diversity in OsDREB1F gene in the Indian wild rice germplasm led to ascertain its association with drought tolerance

(2015) Bikram Pratap Singh et al.   PLANT CELL REPORTS

In Silico Analysis of DREB Transcription Factor Genes and Proteins in Grasses

(2014) Ertugrul Filiz et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Prediction of hydration free energies for the SAMPL4 diverse set of compounds using molecular dynamics simulations with the OPLS-AA force field

(2014) Oliver Beckstein et al.   JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN

DREB1A from Oryza sativa var. IR6: homology modelling and molecular docking

(2014) Muhammad NAWAZ et al.   TURKISH JOURNAL OF BOTANY

Genome-wide survey and expression profiles of the AP2/ERF family in castor bean (Ricinus communis L.)

(2013) Wei Xu et al.   BMC GENOMICS

A genome-wide analysis of the ERF gene family in sorghum

(2013) H.W. Yan et al.   GENETICS AND MOLECULAR RESEARCH

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

APETALA2/Ethylene Responsive Factor (AP2/ERF) transcription factors: mediators of stress responses and developmental programs

(2013) Francesco Licausi et al.   NEW PHYTOLOGIST

GmDREB2A;2, a Canonical DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN2-Type Transcription Factor in Soybean, Is Posttranslationally Regulated and Mediates Dehydration-Responsive Element-Dependent Gene Expression

(2012) J. Mizoi et al.   PLANT PHYSIOLOGY

Evolution of wild cereals during 28 years of global warming in Israel

(2012) E. Nevo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Discovery and expression assessment of the AP2-like genes in Hordeum vulgare

(2011) Jing Zhuang et al.   ACTA PHYSIOLOGIAE PLANTARUM

Genomic and transcriptomic analysis of the AP2/ERF superfamily in Vitis vinifera

(2011) Francesco Licausi et al.   BMC GENOMICS

MetaDBSite: a meta approach to improve protein DNA-binding sites prediction

(2011) Jingna Si et al.   BMC Systems Biology

Experimental strategies for studying transcription factor-DNA binding specificities

(2011) M. Geertz et al.   Briefings in Functional Genomics

Association of an SNP in a novel DREB2-like gene SiDREB2 with stress tolerance in foxtail millet [Setaria italica (L.)]

(2011) Charu Lata et al.   JOURNAL OF EXPERIMENTAL BOTANY

Improved drought and salt tolerance of Arabidopsis thaliana by transgenic expression of a novel DREB gene from Leymus chinensis

(2011) Peng Xianjun et al.   PLANT CELL REPORTS

Molecular basis for specificity of nuclear import and prediction of nuclear localization

(2010) Mary Marfori et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

CkDREB gene in Caragana korshinskii is involved in the regulation of stress response to multiple abiotic stresses as an AP2/EREBP transcription factor

(2010) Xuemin Wang et al.   MOLECULAR BIOLOGY REPORTS

The HADDOCK web server for data-driven biomolecular docking

(2010) Sjoerd J de Vries et al.   Nature Protocols

Gene Structures, Classification and Expression Models of the AP2/EREBP Transcription Factor Family in Rice

(2010) Akhter Most Sharoni et al.   PLANT AND CELL PHYSIOLOGY

Discovery, phylogeny and expression patterns of AP2-like genes in maize

(2010) Jing Zhuang et al.   PLANT GROWTH REGULATION

Identifying and Characterizing Binding Sites and Assessing Druggability

(2009) Thomas A. Halgren   Journal of Chemical Information and Modeling

Analysis of Brassica rapa ESTs: gene discovery and expression patterns of AP2/ERF family genes

(2009) Jing Zhuang et al.   MOLECULAR BIOLOGY REPORTS

Prediction of TF target sites based on atomistic models of protein-DNA complexes

(2008) Vladimir Angarica et al.   BMC BIOINFORMATICS

GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

(2008) Berk Hess et al.   Journal of Chemical Theory and Computation