Cloning, expression, and molecular dynamics simulations of a xylosidase obtained fromThermomyces lanuginosus

Investigation of ligand selectivity in CYP3A7 by molecular dynamics simulations

(2015) Jing-Rong Fan et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Structural conversion of the transformer protein RfaH: new insights derived from protein structure prediction and molecular dynamics simulations

(2015) Nicole Balasco et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Molecular dynamics simulation studies of GSK-3β ATP competitive inhibitors: understanding the factors contributing to selectivity

(2015) Minhajul Arfeen et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Thermostable chitinase II from Thermomyces lanuginosus SSBP: Cloning, structure prediction and molecular dynamics simulations

(2015) Faez Iqbal Khan et al.   JOURNAL OF THEORETICAL BIOLOGY

Protein expression in Pichia pastoris: recent achievements and perspectives for heterologous protein production

(2014) Mudassar Ahmad et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Creation of thermostable and alkaline stable xylanase variants by DNA shuffling

(2014) Dawn Elizabeth Stephens et al.   JOURNAL OF BIOTECHNOLOGY

Protein–ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment

(2013) Jianyi Yang et al.   BIOINFORMATICS

Role of N-terminal residues on folding and stability of C-phycoerythrin: simulation and urea-induced denaturation studies

(2013) Khalid Anwer et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

PDBsum additions

(2013) Tjaart A. P. de Beer et al.   NUCLEIC ACIDS RESEARCH

Secretory expression of a β-xylosidase gene fromThermomyces lanuginosusinEscherichia coliand characterization of its recombinant enzyme

(2012) Z. Chen et al.   LETTERS IN APPLIED MICROBIOLOGY

PTMcode: a database of known and predicted functional associations between post-translational modifications in proteins

(2012) Pablo Minguez et al.   NUCLEIC ACIDS RESEARCH

COFACTOR: an accurate comparative algorithm for structure-based protein function annotation

(2012) Ambrish Roy et al.   NUCLEIC ACIDS RESEARCH

Identification of cavities on protein surface using multiple computational approaches for drug binding site prediction

(2011) Z. Zhang et al.   BIOINFORMATICS

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Developing hybrid approaches to predict pKa values of ionizable groups

(2011) Shawn Witham et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

High-level expression of extracellular secretion of a β-xylosidase gene from Paecilomyces thermophila in Escherichia coli

(2010) Chao Teng et al.   BIORESOURCE TECHNOLOGY

Characterization of α-rhamnosidase activity from a Patagonian Pichia guilliermondii wine strain

(2010) M.E. Rodríguez et al.   JOURNAL OF APPLIED MICROBIOLOGY

Production of recombinant proteins by microbes and higher organisms

(2009) Arnold L. Demain et al.   BIOTECHNOLOGY ADVANCES

Extracellular recombinant protein production from Escherichia coli

(2009) Ye Ni et al.   BIOTECHNOLOGY LETTERS

Characterization of Aspergillus oryzae glycoside hydrolase family 43 β-xylosidase expressed in Escherichia coli

(2009) Satoshi Suzuki et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

CHARMM general force field: A force field for drug-like molecules compatible with the CHARMM all-atom additive biological force fields

(2009) K. Vanommeslaeghe et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Improved prediction of protein side-chain conformations with SCWRL4

(2009) Georgii G. Krivov et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Talaromyces thermophilus β-d-Xylosidase: Purification, Characterization and Xylobiose Synthesis

(2008) Mohamed Guerfali et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

A xylose-tolerant β-xylosidase from Paecilomyces thermophila: Characterization and its co-action with the endogenous xylanase

(2008) Q.J. Yan et al.   BIORESOURCE TECHNOLOGY

Purification and Properties of an Extracellular β-Xylosidase from Aspergillus japonicus and Sequence Analysis of the Encoding Gene

(2008) Motoki Wakiyama et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Radius of gyration as an indicator of protein structure compactness

(2008) M. Yu. Lobanov et al.   MOLECULAR BIOLOGY

SCWRL and MolIDE: computer programs for side-chain conformation prediction and homology modeling

(2008) Qiang Wang et al.   Nature Protocols

A fast and accurate computational approach to protein ionization

(2008) Velin Z. Spassov et al.   PROTEIN SCIENCE