Genomic relationship between SINE retrotransposons, Pol III–Pol II transcription, and chromatin organization: the journey from junk to jewel

Dioxin receptor and SLUG transcription factors regulate the insulator activity of B1 SINE retrotransposons via an RNA polymerase switch

(2011) A. C. Roman et al.   GENOME RESEARCH

LINE-1 Activity in Facultative Heterochromatin Formation during X Chromosome Inactivation

(2010) Jennifer C. Chow et al.   CELL

Cell growth- and differentiation-dependent regulation of RNA polymerase III transcription

(2010) Hélène Dumay-Odelot et al.   CELL CYCLE

Genomic gems: SINE RNAs regulate mRNA production

(2010) Steven L Ponicsan et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Condensin and cohesin complexity: the expanding repertoire of functions

(2010) Andrew J. Wood et al.   NATURE REVIEWS GENETICS

Insulators and promoters: closer than we think

(2010) Jesse R. Raab et al.   NATURE REVIEWS GENETICS

Pol II and its associated epigenetic marks are present at Pol III–transcribed noncoding RNA genes

(2010) Artem Barski et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Human RNA polymerase III transcriptomes and relationships to Pol II promoter chromatin and enhancer-binding factors

(2010) Andrew J Oler et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Genomic binding profiles of functionally distinct RNA polymerase III transcription complexes in human cells

(2010) Zarmik Moqtaderi et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Nuclear Receptor-Induced Chromosomal Proximity and DNA Breaks Underlie Specific Translocations in Cancer

(2009) Chunru Lin et al.   CELL

Spatial organization of genes as a component of regulated expression

(2009) Dave A. Pai et al.   CHROMOSOMA

Transposable elements in gene regulation and in the evolution of vertebrate genomes

(2009) Guillaume Bourque   CURRENT OPINION IN GENETICS & DEVELOPMENT

DNA polymerase ɛ, acetylases and remodellers cooperate to form a specialized chromatin structure at a tRNA insulator

(2009) Namrita Dhillon et al.   EMBO JOURNAL

Mobile elements create structural variation: Analysis of a complete human genome

(2009) J. Xing et al.   GENOME RESEARCH

Recovering genome rearrangements in the mammalian phylogeny

(2009) H. Zhao et al.   GENOME RESEARCH

5'-Transducing SVA retrotransposon groups spread efficiently throughout the human genome

(2009) A. Damert et al.   GENOME RESEARCH

InvAluable junk: The cellular impact and function of Alu and B2 RNAs

(2009) Ryan D. Walters et al.   IUBMB LIFE

L1 retrotransposition in human neural progenitor cells

(2009) Nicole G. Coufal et al.   NATURE

The regulated retrotransposon transcriptome of mammalian cells

(2009) Geoffrey J Faulkner et al.   NATURE GENETICS

The Impact of Local Genome Sequence on Defining Heterochromatin Domains

(2009) Bayly S. Wheeler et al.   PLoS Genetics

Regulation of mammalian gene expression by retroelements and non-coding tandem repeats

(2008) Nikolai V. Tomilin   BIOESSAYS

Condensin-Dependent rDNA Decatenation Introduces a Temporal Pattern to Chromosome Segregation

(2008) Claudio D'Ambrosio et al.   CURRENT BIOLOGY

Boundaries. Boundaries…Boundaries???

(2008) Victoria V Lunyak   CURRENT OPINION IN CELL BIOLOGY

Clustering of yeast tRNA genes is mediated by specific association of condensin with tRNA gene transcription complexes

(2008) R. A. Haeusler et al.   GENES & DEVELOPMENT

Identification of cis-acting sites for condensin loading onto budding yeast chromosomes

(2008) C. D'Ambrosio et al.   GENES & DEVELOPMENT

Evolution of the mammalian transcription factor binding repertoire via transposable elements

(2008) G. Bourque et al.   GENOME RESEARCH

Mapping and sequencing of structural variation from eight human genomes

(2008) Jeffrey M. Kidd et al.   NATURE

Genome-wide B1 retrotransposon binds the transcription factors dioxin receptor and Slug and regulates gene expression in vivo

(2008) A. C. Roman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

L1 recombination-associated deletions generate human genomic variation

(2008) K. Han et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Eukaryotic Genome as an RNA Machine

(2008) P. P. Amaral et al.   SCIENCE