Molecular simulations of protein disorderThis paper is one of a selection of papers published in this special issue entitled “Canadian Society of Biochemistry, Molecular & Cellular Biology 52nd Annual Meeting — Protein Folding: Principles and Diseases” and has undergone the Journal's usual peer review process.

Structural disorder and dynamics of elastinThis paper is one of a selection of papers published in this special issue entitled “Canadian Society of Biochemistry, Molecular & Cellular Biology 52nd Annual Meeting — Protein Folding: Principles and Diseases” and has undergone the Journal's usual peer review process.

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Thermodynamics of β-Sheet Formation in Polyglutamine

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Unfoldomics of human diseases: linking protein intrinsic disorder with diseases

(2009) Vladimir N Uversky et al.   BMC GENOMICS

Predicting intrinsic disorder in proteins: an overview

(2009) Bo He et al.   CELL RESEARCH

Beyond Molecular Beacons: Optical Sensors Based on the Binding-Induced Folding of Proteins and Polypeptides

(2009) Kenneth J. Oh et al.   CHEMISTRY-A EUROPEAN JOURNAL

Biophysical characterization of intrinsically disordered proteins

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Linking folding and binding

(2009) Peter E Wright et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

CDF it all: Consensus prediction of intrinsically disordered proteins based on various cumulative distribution functions

(2009) Bin Xue et al.   FEBS LETTERS

Leucine-rich hydrophobic clusters promote folding of the N-terminus of the intrinsically disordered transactivation domain of p53

(2009) L. Michel Espinoza-Fonseca   FEBS LETTERS

Insight into “insoluble proteins” with pure water

(2009) Jianxing Song   FEBS LETTERS

Simulated Tempering Distributed Replica Sampling, Virtual Replica Exchange, and Other Generalized-Ensemble Methods for Conformational Sampling

(2009) Sarah Rauscher et al.   Journal of Chemical Theory and Computation

Structure and Disorder in an Unfolded State under Nondenaturing Conditions from Ensemble Models Consistent with a Large Number of Experimental Restraints

(2009) Joseph A. Marsh et al.   JOURNAL OF MOLECULAR BIOLOGY

Improved Disorder Prediction by Combination of Orthogonal Approaches

(2009) Avner Schlessinger et al.   PLoS One

Residual structure within the disordered C-terminal segment of p21Waf1/Cip1/Sdi1and its implications for molecular recognition

(2009) Mi-Kyung Yoon et al.   PROTEIN SCIENCE

Order propensity of an intrinsically disordered protein, the cyclin-dependent-kinase inhibitor Sic1

(2009) Stefania Brocca et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Construct optimization for protein NMR structure analysis using amide hydrogen/deuterium exchange mass spectrometry

(2009) Seema Sharma et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Intrinsically Disordered Proteins in Human Diseases: Introducing the D2 Concept

(2008) Vladimir N. Uversky et al.   Annual Review of Biophysics

The effects of conformational heterogeneity on the binding of the Notch intracellular domain to effector proteins: a case of biologically tuned disorder

(2008) Angela Bertagna et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

A Synthetic Resilin Is Largely Unstructured

(2008) Kate M. Nairn et al.   BIOPHYSICAL JOURNAL

The Twilight Zone between Protein Order and Disorder

(2008) A. Szilágyi et al.   BIOPHYSICAL JOURNAL

The unfoldomics decade: an update on intrinsically disordered proteins

(2008) A Keith Dunker et al.   BMC GENOMICS

Equilibrium exchange enhances the convergence rate of umbrella sampling

(2008) Chris Neale et al.   CHEMICAL PHYSICS LETTERS

United we stand: combining structural methods

(2008) Nathan P Cowieson et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Folding landscapes of ankyrin repeat proteins: experiments meet theory

(2008) Doug Barrick et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Molecular simulation as an aid to experimentalists

(2008) Wilfred F van Gunsteren et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Function and structure of inherently disordered proteins

(2008) A Keith Dunker et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Calculation of absolute protein-ligand binding free energy using distributed replica sampling

(2008) Tomas Rodinger et al.   JOURNAL OF CHEMICAL PHYSICS

Convergence of folding free energy landscapes via application of enhanced sampling methods in a distributed computing environment

(2008) Xuhui Huang et al.   JOURNAL OF CHEMICAL PHYSICS

Molecular simulation of multistate peptide dynamics: A comparison between microsecond timescale sampling and multiple shorter trajectories

(2008) Luca Monticelli et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

ABSINTH: A new continuum solvation model for simulations of polypeptides in aqueous solutions

(2008) Andreas Vitalis et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Rate of Loop Formation in Peptides: A Simulation Study

(2008) Matthias J. Feige et al.   JOURNAL OF MOLECULAR BIOLOGY

Role of Intrinsic Flexibility in Signal Transduction Mediated by the Cell Cycle Regulator, p27Kip1

(2008) Charles A. Galea et al.   JOURNAL OF MOLECULAR BIOLOGY

Natively Unfolded Protein Stability as a Coil-to-Globule Transition in Charge/Hydropathy Space

(2008) Henry S. Ashbaugh et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Role of Backbone−Solvent Interactions in Determining Conformational Equilibria of Intrinsically Disordered Proteins

(2008) Hoang T. Tran et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Mechanism of alpha-synuclein oligomerization and membrane interaction: theoretical approach to unstructured proteins studies

(2008) Igor F. Tsigelny et al.   Nanomedicine-Nanotechnology Biology and Medicine

Artificial nanopores that mimic the transport selectivity of the nuclear pore complex

(2008) Tijana Jovanovic-Talisman et al.   NATURE

Dynamic equilibrium engagement of a polyvalent ligand with a single-site receptor

(2008) T. Mittag et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

TOP-IDP-Scale: A New Amino Acid Scale Measuring Propensity for Intrinsic Disorder

(2008) Andrew Campen et al.   PROTEIN AND PEPTIDE LETTERS

A robust approach for analyzing a heterogeneous structural ensemble

(2008) David F. Lowry et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

BIOCHEMISTRY: Controlled Chaos

(2008) V. N. Uversky et al.   SCIENCE

Tight Regulation of Unstructured Proteins: From Transcript Synthesis to Protein Degradation

(2008) J. Gsponer et al.   SCIENCE

The Effect of a ΔK280 Mutation on the Unfolded State of a Microtubule-Binding Repeat in Tau

(2008) Austin Huang et al.   PLoS Computational Biology

Disordered Flanks Prevent Peptide Aggregation

(2008) Sanne Abeln et al.   PLoS Computational Biology

Intramolecular Cohesion of Coils Mediated by Phenylalanine–Glycine Motifs in the Natively Unfolded Domain of a Nucleoporin

(2008) V. V. Krishnan et al.   PLoS Computational Biology

A polymer physics perspective on driving forces and mechanisms for protein aggregation

(2007) Rohit V. Pappu et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Experimental Parameterization of an Energy Function for the Simulation of Unfolded Proteins

(2007) Anders B. Norgaard et al.   BIOPHYSICAL JOURNAL

Coarse-grained models of protein folding: toy models or predictive tools?

(2007) Cecilia Clementi   CURRENT OPINION IN STRUCTURAL BIOLOGY

Fuzzy complexes: polymorphism and structural disorder in protein–protein interactions

(2007) Peter Tompa et al.   TRENDS IN BIOCHEMICAL SCIENCES

To be folded or to be unfolded?

(2004) Sergiy O. Garbuzynskiy et al.   PROTEIN SCIENCE