Experimental evolution of protein–protein interaction networks

Genome-scale engineering for systems and synthetic biology

(2013) K. M. Esvelt et al.   Molecular Systems Biology

The Busiest of All Ribosomal Assistants: Elongation Factor Tu

(2012) Darius Kavaliauskas et al.   BIOCHEMISTRY

Different selective pressures lead to different genomic outcomes as newly-formed hybrid yeasts evolve

(2012) Jeff S Piotrowski et al.   BMC EVOLUTIONARY BIOLOGY

Reconstitution of translation from Thermus thermophilus reveals a minimal set of components sufficient for protein synthesis at high temperatures and functional conservation of modern and ancient translation components

(2012) Ying Zhou et al.   NUCLEIC ACIDS RESEARCH

Simulated Evolution of Protein-Protein Interaction Networks with Realistic Topology

(2012) G. Jack Peterson et al.   PLoS One

Protein misinteraction avoidance causes highly expressed proteins to evolve slowly

(2012) J.-R. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cellular crowding imposes global constraints on the chemistry and evolution of proteomes

(2012) E. D. Levy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The role of robustness in phenotypic adaptation and innovation

(2012) A. Wagner   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The interface of protein structure, protein biophysics, and molecular evolution

(2012) David A. Liberles et al.   PROTEIN SCIENCE

Real-Time Evolution of New Genes by Innovation, Amplification, and Divergence

(2012) J. Nasvall et al.   SCIENCE

Experimental evolution

(2012) Tadeusz J. Kawecki et al.   TRENDS IN ECOLOGY & EVOLUTION

Evidence for the Robustness of Protein Complexes to Inter-Species Hybridization

(2012) Jean-Baptiste Leducq et al.   PLoS Genetics

Adaptive Evolution of the Lactose Utilization Network in Experimentally Evolved Populations of Escherichia coli

(2012) Selwyn Quan et al.   PLoS Genetics

Utilizing natural diversity to evolve protein function: applications towards thermostability

(2011) Megan F Cole et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Topology of protein interaction network shapes protein abundances and strengths of their functional and nonspecific interactions

(2011) M. Heo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deep mutational scanning: assessing protein function on a massive scale

(2011) Carlos L. Araya et al.   TRENDS IN BIOTECHNOLOGY

Interconversion of Functional Motions between Mesophilic and Thermophilic Adenylate Kinases

(2011) Michael D. Daily et al.   PLoS Computational Biology

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

Experimental Evolution of Adenylate Kinase Reveals Contrasting Strategies toward Protein Thermostability

(2010) Corwin Miller et al.   BIOPHYSICAL JOURNAL

Evolution of a single gene highlights the complexity underlying molecular descriptions of fitness

(2010) Matthew I. Peña et al.   CHAOS

Introduction to Focus Issue: Genetic Interactions

(2010) Daniel Segrè et al.   CHAOS

Bacterial translation elongation factor EF-Tu interacts and colocalizes with actin-like MreB protein

(2010) H. J. Defeu Soufo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Adenylate Kinase and AMP Signaling Networks: Metabolic Monitoring, Signal Communication and Body Energy Sensing

(2009) Petras Dzeja et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Evolution of biomolecular networks — lessons from metabolic and protein interactions

(2009) Takuji Yamada et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Exploring the evolutionary rate differences of party hub and date hub proteins in Saccharomyces cerevisiae protein–protein interaction network

(2008) Bratati Kahali et al.   GENE

Palaeotemperature trend for Precambrian life inferred from resurrected proteins

(2008) Eric A. Gaucher et al.   NATURE

Reconstruction of biochemical networks in microorganisms

(2008) Adam M. Feist et al.   NATURE REVIEWS MICROBIOLOGY

Evolution of Complex Modular Biological Networks

(2008) Arend Hintze et al.   PLoS Computational Biology

Why Do Hubs in the Yeast Protein Interaction Network Tend To Be Essential: Reexamining the Connection between the Network Topology and Essentiality

(2008) Elena Zotenko et al.   PLoS Computational Biology