Review
Cell Biology
Li Chen, Anna Kashina
Summary: Post-translational modifications (PTM) involve enzyme-mediated covalent addition of functional groups to proteins during or after synthesis, greatly increasing biological complexity and playing a crucial role in biological regulation.
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY
(2021)
Article
Cell Biology
Zilu Wang, Tongxin Li, Zhen Gong, Jianping Xie
Summary: ISG15, encoded by a type I interferon inducible gene, plays an important role in a cellular process called ISGylation, which is a powerful host tactic against intracellular pathogens like Mtb. However, the exact role of ISGylation in immunity remains elusive.
CELLULAR SIGNALLING
(2022)
Review
Biochemistry & Molecular Biology
Ivana Samarzija
Summary: The specific functional form of a protein is mostly achieved through dynamic interactions of many enzymes in post-translational modifications, which cells widely use to respond to stimuli, regulate transcription, and maintain proteostasis. Post-translational modifications play important roles in driving prostate cancer, particularly in regulating protein activity at the level of post-translational modifications.
Article
Cell Biology
Mohd Shariq, Neha Quadir, Javaid Ahmad Sheikh, Alok Kumar Singh, William R. Bishai, Nasreen Z. Ehtesham, Seyed E. Hasnain
Summary: The host utilizes ubiquitin pathway to combat intracellular pathogens, while pathogens like Mycobacterium tuberculosis exploit this pathway to dampen host innate immune response.
Review
Cell Biology
Mingyue Zheng, Guoxiang Jin, Zhongjun Zhou
Summary: Lamins, ancient intermediate filament proteins, are functionally regulated by post-translational modifications, contributing to various biological functions. Deregulation of lamins is associated with abnormal nuclear morphology and chromatin disorganization, leading to diseases. Understanding these modifications provides new insights into the molecular mechanisms underlying diseases and potential therapeutic strategies.
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY
(2022)
Article
Biochemistry & Molecular Biology
Giovanni Madeo, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio
Summary: Myristoylation (MYR) is a protein modification where a myristoyl group is covalently attached to a translation or after translation. SVMyr is a web server based on Support Vector Machines (SVM) that can detect both co- and post-translational myristoylation sites. The method has high scores in cross validation and outperforms other methods on experimental datasets. SVMyr can also predict post-translational myristoylation sites and confirm existing myristoylated protein sets while identifying new NMT substrates.
JOURNAL OF MOLECULAR BIOLOGY
(2022)
Review
Biochemistry & Molecular Biology
Gunjan Arora, Ankur Bothra, Gareth Prosser, Kriti Arora, Andaleeb Sajid
Summary: The article discusses the contribution of post-translational modifications to mycobacterial physiology, describes the related cellular processes, and discusses how these processes are linked to drug resistance. The understanding of drug-resistance regulons and associated PTMs can aid in developing effective drugs against TB.
Article
Biochemical Research Methods
Dimitrios Tsikas
Summary: Lysine residues in proteins undergo various chemical modifications, including carbonylation by glyoxal (GO) and methylglyoxal (MGO). Malondialdehyde (MDA) is another carbonyl species formed enzymatically and nonenzymatically. These carbonyl species can occur in free forms or be adducted to proteins, particularly lysine residues. MDA is commonly used as a biomarker of lipid peroxidation, with plasma and serum being the most frequently analyzed samples. However, preanalytical factors, such as artificial MDA formation in lipid-rich samples, can greatly affect MDA concentrations.
JOURNAL OF PROTEOME RESEARCH
(2023)
Article
Biochemistry & Molecular Biology
Dan Wu, Tao Liu
Summary: Understanding post-translational modifications is crucial for manipulating physiological processes in eukaryotes. Genetic code expansion technology has been used to investigate the roles of these modifications, and can be combined with synthetic biology to create genetically modified organisms. This article discusses the applications, limitations, and future perspectives of genetic code expansion technology for studying post-translational modifications, as well as the implications for genetically modified organisms.
Article
Biochemistry & Molecular Biology
Sharon L. Campbell, Mark R. Philips
Summary: Mutations in RAS genes are the most common driving force behind cancer development. RAS proteins, acting as binary molecular switches, control cellular growth through a complex signaling pathway. In addition to nucleotide-binding properties, RAS proteins are also regulated by numerous post-translational modifications, which are currently a high priority for drug discovery research in the field of RAS biology.
CURRENT OPINION IN STRUCTURAL BIOLOGY
(2021)
Article
Agriculture, Multidisciplinary
Qibin Wu, Zhenxiang Li, Jingtao Yang, Fu Xu, Xueqin Fu, Liping Xu, Chuihuai You, Dongjiao Wang, Yachun Su, Youxiong Que
Summary: This study reports the first comprehensive analysis of protein lysine acetylation, 2-hydroxyisobutyrylation, and lysine lactylation in sugarcane. These post-translational modifications were found to be involved in energy metabolism and stress response. The results provide new insights into the molecular mechanisms of protein PTMs in sugarcane.
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
(2023)
Review
Oncology
Ana Gonzalez-Garcia, Antonio Garrido, Ana C. Carrera
Summary: Genetic alterations in the PI3-kinase/PTEN pathway are common in cancer cells. Current efforts to treat PTEN-dependent tumors mainly focus on PI3-kinase inhibition, but modulating PTEN post-translational modifications could provide alternative therapeutic strategies.
Article
Microbiology
Francesca Boldrin, Itxaso Anso, Sogol Alebouyeh, Iker A. Sevilla, Marivi Geijo, Joseba M. Garrido, Alberto Marina, Laura Cioetto Mazzabo, Greta Segafreddo, Marcelo E. Guerin, Riccardo Manganelli, Rafael Prados-Rosales
Summary: The research highlights the vital role of PatA, an acyltransferase involved in the PIM biosynthetic pathway, for the survival and virulence of Mycobacterium tuberculosis. Silencing the patA gene leads to bactericidal effects in vitro and in vivo, underscoring the potential of PatA as a novel drug target against this major human pathogen.
JOURNAL OF BACTERIOLOGY
(2021)
Review
Biochemistry & Molecular Biology
Lynsay Blake, Martin J. Cann
Summary: Carbon dioxide plays a crucial role in various life processes, regulating cellular reactions, transport, maintenance, and behavior. Protein carbamate modification, mediated by carbon dioxide, is a mechanism that may alter protein function and participate in sensing and signaling.
FRONTIERS IN MOLECULAR BIOSCIENCES
(2022)
Review
Biochemistry & Molecular Biology
Min-Seon Hwang, Jingyeong Park, Yunha Ham, In Hye Lee, Kyung-Hee Chun
Summary: Adipocyte senescence, caused by factors like DNA damage, oxidative stress, telomere dysfunction, and chronic lipid accumulation, can disrupt metabolic homeostasis and lead to various diseases and aging. Understanding the role of post-translational modifications (PTMs) in the regulation of adipocyte senescence is crucial for developing effective strategies to combat metabolic diseases.
INTERNATIONAL JOURNAL OF BIOLOGICAL SCIENCES
(2023)
Article
Microbiology
Daniel Schafle, Petra Selchow, Barbara Borer, Michael Meuli, Anna Rominski, Bettina Schulthess, Peter Sander
Summary: The study suggests that rifabutin may not be inactivated by Arr in Mycobacterium abscessus, leading to decreased MIC values and potentially enhancing drug efficacy in treating infections.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
(2021)
Article
Microbiology
Giovanni Ghielmetti, Giuliana Rosato, Alberto Trovato, Ute Friedel, Constanze Kirchgaessner, Carmen Perroulaz, Wolfgang Pendl, Bettina Schulthess, Guido V. Bloemberg, Peter M. Keller, Roger Stephan, Enrico Tortoli
Summary: The study identified a novel slow-growing mycobacterial species isolated from lymph nodes of two sows in Switzerland, which were not related to any previously described Mycobacterium species. The new species proposed was named Mycobacterium helveticum sp. nov.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2021)
Article
Microbiology
Bettina Schulthess, Daniel Schafle, Nicole Kalin, Tamara Widmer, Peter Sander
Summary: Recent research using the MGIT 960/EpiCenter TB eXiST platform determined the antibiotic susceptibility patterns of 48 clinical M. chimaera isolates and 139 other nontuberculous mycobacteria. The findings showed similar susceptibility of M. chimaera and other members of the M. avium complex to various drugs, while M. kansasii exhibited increased susceptibility to the same drugs. Further studies are needed to establish the correlation of in vitro susceptibility and clinical outcomes.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
(2021)
Article
Chemistry, Multidisciplinary
David Dailler, Andrea Dorst, Daniel Schafle, Peter Sander, Karl Gademann
Summary: Fidaxomicin is a marketed antibiotic for CDI treatment, with semi-synthetic modifications presenting a promising strategy to improve its pharmacokinetic properties and circumvent resistance development.
COMMUNICATIONS CHEMISTRY
(2021)
Article
Chemistry, Multidisciplinary
Cora L. Dieterich, Silke Probst, Reiko Ueoka, Ioana Sandu, Daniel Schaefle, Michael Dal Molin, Hannah A. Minas, Rodrigo Costa, Annette Oxenius, Peter Sander, Joern Piel
Summary: Genome mining and bioactivity studies have identified the sponge-derived bacterium Aquimarina sp. Aq135 as a potential producer of new antibiotics, with the discovery of antibacterial peptides aquimarins. The study also showed that the chlorinations by Fe-II/alpha-ketoglutarate-dependent chlorinase AqmA may not be necessary for antibacterial activity, but can enhance cytotoxicity.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
(2022)
Article
Microbiology
Petra Selchow, Diane J. Ordway, Deepshikha Verma, Nicholas Whittel, Aline Petrig, Sven N. Hobbie, Erik C. Bottger, Peter Sander
Summary: The antibiotic therapy of Mycobacterium abscessus infections is difficult due to the pathogen's resistance to available antimicrobials. However, the study suggests that the aminoglycoside apramycin shows potent bactericidal activity against M. abscessus and may be a promising treatment option.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
(2022)
Article
Immunology
Ying Waeckerle-Men, Zuzanna K. Kotkowska, Geraldine Bono, Agathe Duda, Isabel Kolm, Eleni M. Varypataki, Beat Amstutz, Michael Meuli, Anders Hogset, Thomas M. Kuendig, Cornelia Halin, Peter Sander, Pal Johansen
Summary: This study demonstrates the use of photochemical internalization (PCI) to improve the immunogenicity of live bacterial vaccines. By combining a photosensitizer with Mycobacterium bovis BCG and activating it with light, stronger CD4 and CD8 T-cell responses were induced. This approach also facilitated antigen presentation and caused local inflammation, enhancing the stimulation of antigen-specific immune responses.
FRONTIERS IN IMMUNOLOGY
(2022)
Article
Microbiology
Bettina Schulthess, Fatma Nur Akdogan Kittana, Rico Homke, Peter Sander
Summary: In this study, we investigated the distribution of minimum inhibitory concentrations (MICs) of bedaquiline and clofazimine for 61 clinical isolates of M. abscessus using different media and incubation times. Our findings demonstrate that incubation time and growth media play a critical role in determining the MIC. This information will be valuable for establishing clinical breakpoints for in vitro susceptibility testing of bedaquiline and clofazimine in M. abscessus.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
(2022)
Review
Biochemistry & Molecular Biology
Michele Sorgenfrei, Lea M. Hurlimann, Melissa M. Remy, Peter M. Keller, Markus A. Seeger
Summary: This article summarizes various biomolecules used for capturing live bacteria, including immune proteins, antibodies, aptamers, phage proteins, and antimicrobial peptides. The article also discusses the potential use of nanobodies targeting conserved surface-accessible proteins as promising biomolecules for pathogen capture.
TRENDS IN BIOCHEMICAL SCIENCES
(2022)
Article
Medicine, General & Internal
Martin Mueller, Nadine Saegesser, Peter M. Keller, Spyridon Arampatzis, Benedict Steffens, Simone Ehrhard, Alexander B. Leichtle
Summary: UFC parameters can safely rule out significant bacterial growth, but cannot adequately predict positive urine culture growth or mixed culture growth.
Letter
Respiratory System
Nicola Ivan Lore, Fabio Saliu, Andrea Spitaleri, Daniel Schafle, Francesca Nicola, Daniela Maria Cirillo, Peter Sander
EUROPEAN RESPIRATORY JOURNAL
(2022)
Article
Public, Environmental & Occupational Health
P. W. Schreiber, R. Zihlmann, V Schaerer, B. Hasse, F. Imkamp, B. Schulthess, P. Sander, W. Zingg
Summary: This study investigated the longitudinal dynamics of mycobacterial growth in heater-cooler devices (HCDs) produced by LivaNova. The results showed that with longer duration of HCD use, the detection rates of non-tuberculous mycobacteria (NTM) and Mycobacterium chimaera increased.
JOURNAL OF HOSPITAL INFECTION
(2023)
Article
Biochemistry & Molecular Biology
Michael P. Bronnimann, Lea Hirzberger, Peter M. Keller, Monika Gsell-Albert
Summary: This study examined the antibacterial effect and mechanism of action of iodinated X-ray contrast agents and complexed lanthanide MRI contrast solutions on six different microorganisms. Bacteria were exposed to media containing contrasting agents at different concentrations and pH levels for varying durations. The antibacterial effect was further tested using agar disk diffusion analysis and the microdilution inhibition method. Bactericidal effects were observed at low concentrations and low pH, specifically for Staphylococcus aureus and Escherichia coli.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2023)
Article
Infectious Diseases
Aline Moser, Edgar Campos-Madueno, Parham Sendi, Vincent Perreten, Peter M. Keller, Alban Ramette, Andrea Endimiani
Summary: This study characterized an OXA-484 carbapenemase-producing Escherichia coli strain from a Swiss patient infected by SARS-CoV-2 and repatriated from India. The patient was found to be infected with the SARS-CoV-2 B.1.617.2 lineage and colonized with a sequence type 410 E. coli strain producing OXA-484, a carbapenemase not yet reported in Switzerland.
JOURNAL OF GLOBAL ANTIMICROBIAL RESISTANCE
(2021)
Article
Infectious Diseases
Kathrin Zurcher, Martina L. Reichmuth, Marie Ballif, Chloe Loiseau, Sonia Borrell, Miriam Reinhard, Veronika Skrivankova, Rico Homke, Peter Sander, Anchalee Avihingsanon, Alash'le G. Abimiku, Olivier Marcy, Jimena Collantes, E. Jane Carter, Robert J. Wilkinson, Helen Cox, Marcel Yotebieng, Robin Huebner, Lukas Fenner, Erik C. Bottger, Sebastien Gagneux, Matthias Egger
Summary: This study aimed to investigate the impact of concordance or discordance between drug susceptibility testing and whole-genome sequencing results on mortality in tuberculosis patients from high-burden countries. The findings revealed discrepancies between drug resistance patterns obtained locally and WGS results, leading to underdiagnosis of drug resistance, inappropriate treatment, and increased mortality.
Article
Biochemistry & Molecular Biology
Soojung Hahn, Gyuri Kim, Sang-Man Jin, Jae Hyeon Kim
Summary: This study utilized three-dimensional intestinal organoids to investigate the effects of metformin on inflammatory bowel disease (IBD) and found that metformin can enhance intestinal barrier function and reduce levels of inflammatory cytokines.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
V. V. Sudarev, M. S. Gette, S. V. Bazhenov, O. M. Tilinova, E. V. Zinovev, I. V. Manukhov, A. I. Kuklin, Yu. L. Ryzhykau, A. V. Vlasov
Summary: This study investigated the self-assembly processes of ferritin-based protein complexes and obtained structurally characterized oligomeric states. These results provide new potential and opportunities for the application of ferritin in various fields.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Yalda Sabaghi, Farnaz Pourfarzad, Leila Zolghadr, Azita Bahrami, Tahereh Shojazadeh, Alireza Farasat, Nematollah Gheibi
Summary: p-Coumaric acid (p-CA) is a plant compound with anti-cancer activities. This study designed a nano-liposomal carrier containing p-CA to enhance its effectiveness against melanoma cells. The findings showed that the liposomal form of p-CA had a greater impact on the cells. Kinetic modeling indicated that the best fitting model was zero-order.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
M. D. Nazmul Hasan, Md Mahfuzur Rahman, Al Asmaul Husna, Nobuhiro Nozaki, Osamu Yamato, Naoki Miura
Summary: This study investigated the expression of ncRNAs other than miRNAs in different histologic subtypes of canine mammary gland tumors (MGT). Three aberrantly expressed ncRNAs were identified as potential biomarkers for differentiating MGT subtypes. YRNA and tRFs expression levels were found to be decreased in metastatic compared to primary MGT cell lines.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Seine A. Shintani
Summary: In this study, the researchers used signal analysis to study the instantaneous amplitude and phase of sarcomeric oscillations in skeletal muscle. They identified two types of oscillations, sarcomeric oscillations and sarcosynced oscillations, and visualized their behavior during propagating waves. The researchers discovered the presence of sarcomeric defect holes and sarcomeric collision holes, which are important indicators for understanding the oscillation properties of sarcomeres. This finding has important implications for improving our understanding of muscle function and its regulatory mechanisms.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Shuanglin Zhang, Yuzhong Jia, Guolan Ma, Yanyan Yang, Zhenzhen Cao, Antao Luo, Zefu Zhang, Shihan Li, Jie Wen, Hanfeng Liu, Jihua Ma
Summary: Bupleurum is an antiarrhythmic agent that may exert its effects by inhibiting L-type calcium channels.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Tomotaka Ohkubo, Yasuhiko Matsumoto, Hiroaki Sasaki, Kaoru Kinoshita, Yuki Ogasawara, Takashi Sugita
Summary: This study found that Citrobacter koseri inhibits the growth of Staphylococcus epidermidis, disrupting the balance between S. epidermidis and Staphylococcus aureus, and exacerbating inflammation in atopic dermatitis.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Toshifumi Asano, Philipp Sasse, Takao Nakata
Summary: A Cre recombination-based fluorescent reporter system was developed to monitor cell-cell fusion. The system successfully detected the formation of multinuclear myotubes and placental syncytiotrophoblast. This tool could facilitate the study of cell-to-cell fusion.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Ke Shi, Yunlong Shan, Xiao Sun, Kuida Chen, Qiong Luo, Qiang Xu
Summary: This study found that low expression of TP53INP2 is associated with poor survival in colorectal cancer (CRC) patients. As the malignancy of CRC progresses, TP53INP2 expression gradually decreases. Knockdown of TP53INP2 promotes CRC cell proliferation and tumor growth. Mechanistically, TP53INP2 deficiency decreases phosphorylation of beta-catenin, leading to increased accumulation and enhanced nuclear translocation and transcriptional activity. Additionally, TP53INP2 sequesters TIM50, inhibiting its activation of beta-catenin. In conclusion, downregulation of TP53INP2 promotes CRC progression by activating beta-catenin.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Martina Rossi, Fabio Tomaselli, Alejandro Hochkoeppler
Summary: Oligomeric enzymes are known for their higher catalytic rates compared to monomeric enzymes, but the extent of additivity in their activity is still not well understood. This study used tetrameric rabbit lactate dehydrogenase as a model to examine the kinetics of its catalytic action. Surprisingly, when the concentration of the limiting reactant exceeded that of a single subunit, there was a significant slowdown in the enzyme's conformational rearrangements.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Amin Sahraei, Mohammad Javad Shamsoddini, Fakhrossadat Mohammadi, Leila Hassani
Summary: This study explored the inhibitory effects of gallium curcumin, indium curcumin, and vanadyl curcumin on the amyloid fibrillation of hen egg white lysozyme, as well as the binding interactions of these metal complexes with the enzyme. The results showed that indium curcumin and vanadyl curcumin exhibited higher binding affinities and stronger inhibitory effects on amyloid fibrillation compared to gallium curcumin.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Takahiro Sasaki, Yoshiki Kuse, Shinsuke Nakamura, Masamitsu Shimazawa
Summary: PGRN deficiency plays a significant role in cardiac remodeling and arrhythmias post-myocardial infarction (MI), potentially by promoting metabolic abnormalities in macrophages.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Hongwei Zhao, Yiqiang Li, Yibo Zhang, Chi Zhang
Summary: Electrical brain stimulation technology is commonly used to treat brain neurological disorders, but it can cause side effects. This study investigated the impact of electric fields on nerve fibers and revealed the possible origin of side effects. The findings provide guidance for selecting electrical parameters in clinical stimulation therapy.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Julia S. Scott, Lake-Ee Quek, Andrew J. Hoy, Johannes V. Swinnen, Zeyad D. Nassar, Lisa M. Butler
Summary: The fatty acid elongation enzyme ELOVL5 plays a critical role in promoting metastasis in prostate cancer. Knocking down ELOVL5 leads to the accumulation of malonyl-CoA, which inhibits fatty acid oxidation in mitochondria. This study highlights the importance of fatty acid elongation in regulating cell viability and provides a potential target for prostate cancer treatment.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)
Article
Biochemistry & Molecular Biology
Zan Zhou, Wen-jun Jiang, Li Li, Jun-qiang Si
Summary: This study investigates the effect of noise exposure on cognitive function in mice and explores the underlying molecular mechanisms. The findings suggest that noise exposure leads to increased inflammation, increased phosphorylation of Tau protein, and decreased levels of postsynaptic density protein, resulting in cognitive impairment.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2024)