Exploring the zebrafish embryo as an alternative model for the evaluation of liver toxicity by histopathology and expression profiling

Molecular signatures database (MSigDB) 3.0

(2011) A. Liberzon et al.   BIOINFORMATICS

An Apo-14 Promoter-Driven Transgenic Zebrafish That Marks Liver Organogenesis

(2011) Rui Wang et al.   PLoS One

Effects of pooling RNA from samples treated with different compounds for determining class specific biomarkers and processes in toxicogenomics

(2011) Tessa E. Pronk et al.   TOXICOLOGY IN VITRO

Relative embryotoxicity of two classes of chemicals in a modified zebrafish embryotoxicity test and comparison with their in vivo potencies

(2011) Sanne A.B. Hermsen et al.   TOXICOLOGY IN VITRO

Deep sequencing of the innate immune transcriptomic response of zebrafish embryos to Salmonella infection

(2010) Anita Ordas et al.   FISH & SHELLFISH IMMUNOLOGY

Transcription factors ETF, E2F, and SP-1 are involved in cytokine-independent proliferation of murine hepatocytes

(2010) Sebastian Zellmer et al.   HEPATOLOGY

Transcriptome analysis of Traf6 function in the innate immune response of zebrafish embryos

(2010) Oliver W. Stockhammer et al.   MOLECULAR IMMUNOLOGY

ZFIN: enhancements and updates to the zebrafish model organism database

(2010) Y. Bradford et al.   NUCLEIC ACIDS RESEARCH

Comparison of HepG2 and HepaRG by Whole-Genome Gene Expression Analysis for the Purpose of Chemical Hazard Identification

(2010) Danyel G. J. Jennen et al.   TOXICOLOGICAL SCIENCES

Accumulation and metabolism of drugs and CYP probe substrates in zebrafish larvae

(2010) W. Alderton et al.   XENOBIOTICA

New school in liver development: Lessons from zebrafish

(2009) Jaime Chu et al.   HEPATOLOGY

Liver development in zebrafish (Danio rerio)

(2009) Ting Tao et al.   Journal of Genetics and Genomics

Ontogeny and nutritional control of adipogenesis in zebrafish (Danio rerio)

(2009) Edward J. Flynn et al.   JOURNAL OF LIPID RESEARCH

Deep sequencing of the zebrafish transcriptome response to mycobacterium infection

(2009) Zoltán Hegedűs et al.   MOLECULAR IMMUNOLOGY

Comparison between zebrafish and Hep G2 assays for the predictive identification of hepatotoxins

(2009) Mathew Jones et al.   TOXICOLOGY

Interactions between immune and biotransformation systems in fish: A review

(2008) Stéphane Reynaud et al.   AQUATIC TOXICOLOGY

Cadmium, cobalt and lead cause stress response, cell cycle deregulation and increased steroid as well as xenobiotic metabolism in primary normal human bronchial epithelial cells which is coordinated by at least nine transcription factors

(2008) Felix Glahn et al.   ARCHIVES OF TOXICOLOGY

Presenting and exploring biological pathways with PathVisio

(2008) Martijn P van Iersel et al.   BMC BIOINFORMATICS

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms

(2008) Peter A. C. 't Hoen et al.   NUCLEIC ACIDS RESEARCH

Parallelogram Approach Using Rat-Human In Vitro and Rat In Vivo Toxicogenomics Predicts Acetaminophen-induced Hepatotoxicity in Humans

(2008) Anne S. Kienhuis et al.   TOXICOLOGICAL SCIENCES

Microarray analysis in rat liver slices correctly predicts in vivo hepatotoxicity

(2008) M ELFERINK et al.   TOXICOLOGY AND APPLIED PHARMACOLOGY

Anni 2.0: a multipurpose text-mining tool for the life sciences

(2008) Rob Jelier et al.   GENOME BIOLOGY

High-resolution in situ hybridization to whole-mount zebrafish embryos

(2007) Christine Thisse et al.   Nature Protocols