Article
Environmental Sciences
Yongcui Wang, Lei Chu, Zhimin Liu, MuSa Ala, Jixiang Lin, Jianqiang Qian, Quanlai Zhou, Lixin Wang
Summary: This study investigates the ability of soil seed banks to naturally regenerate bare sandy patches in a degraded grassland in Northern China. The findings suggest that the local soil seed bank has low density and species richness, indicating limited seed sources for natural regeneration. Different restoration measures are needed based on the size of the bare patches.
INTERNATIONAL SOIL AND WATER CONSERVATION RESEARCH
(2022)
Article
Agronomy
Na Guo, Chao Sang, Mei Huang, Rui Zhang, A. Allan Degen, Lina Ma, Yanfu Bai, Tao Zhang, Wenyin Wang, Jiahuan Niu, Shanshan Li, Ruijun Long, Zhanhuan Shang
Summary: Long-term active restoration is important for restoring degraded grasslands. The establishment of a viable soil seed bank plays a crucial role in enhancing vegetation resilience. However, little is known about how the soil seed bank affects vegetation resilience following long-term active restoration of degraded grasslands.
AGRONOMY FOR SUSTAINABLE DEVELOPMENT
(2023)
Article
Plant Sciences
Wencheng Li, Aiping Huang, Tiancai Zhou, Miao Liu, Sujie Ma, Ningning Zhao, Xiangtao Wang, Jian Sun
Summary: This study investigates the key driving factors of the underground bud bank size in the alpine grassland, such as soil enzyme, plant diversity, and precipitation. It also highlights the importance of the bud bank in the restoration of grassland ecosystems.
FRONTIERS IN PLANT SCIENCE
(2023)
Article
Mathematics, Applied
J. Tenreiro Machado, Yuri Luchko
Summary: In this paper, the nontrivial zeros of the Riemann zeta-function are analyzed using the multidimensional scaling (MDS) algorithm and computational visualization features. Different metrics produce different structures, with the Lorentzian metric revealing clear periodic patterns.
COMMUNICATIONS IN NONLINEAR SCIENCE AND NUMERICAL SIMULATION
(2021)
Article
Agronomy
Mingrui He, Chunming Xin, Carol C. Baskin, Jinghua Li, Yunpeng Zhao, Hang An, Xiongjie Sheng, Liang Zhao, Yin Zhao, Miaojun Ma
Summary: The study found that decreasing soil moisture directly led to an increase in richness and density of the transient seed bank, and indirectly led to a decrease in density of the transient seed bank and an increase in richness and density of the persistent seed bank through soil pH and richness and abundance of vegetation. As wetlands degraded, the similarity between the seed bank and vegetation increased.
Article
Operations Research & Management Science
Qing-Na Li, Chi Zhang, Mengzhi Cao
Summary: The paper introduces an ordinal weighted Euclidean distance matrix model for NMDS and successfully applies it to image ranking, showing improvements over existing methods on two datasets.
ASIA-PACIFIC JOURNAL OF OPERATIONAL RESEARCH
(2022)
Article
Ecology
Orsolya Valko, Balazs Deak, Peter Torok, Katalin Toth, Reka Kiss, Andras Kelemen, Tamas Miglecz, Judit Sonkoly, Bela Tothmeresz
Summary: Planting grasses can help establish closed perennial vegetation quickly, but creating diverse and natural-like grasslands is challenging. Understanding seed bank changes and vegetation dynamics is crucial for effective grassland restoration management. Long-term management is necessary for controlling weed emergence from dense seed banks in restored grasslands.
RESTORATION ECOLOGY
(2021)
Article
Multidisciplinary Sciences
Agnes Toth, Balazs Deak, Katalin Toth, Reka Kiss, Katalin Lukacs, Zoltan Radai, Laura Godo, Sandor Borza, Andras Kelemen, Tamas Miglecz, Zoltan Batori, Tibor Jozsef Novak, Orsolya Valko
Summary: This study examines the vertical distribution of soil seed banks in alkaline grasslands, finding that seed density and species richness decrease with soil depth and penetration resistance. However, germinable seeds were still detected in the deepest soil layers. Forbs, grassland species, and short-lived species were more abundant in deep layers, while graminoids, weeds, and perennial species were less prevalent.
Article
Plant Sciences
Marta Gaia Sperandii, Francesco de Bello, Enrique Valencia, Lars Gotzenberger, Manuele Bazzichetto, Thomas Galland, Anna E-Vojtko, Luisa Conti, Peter B. Adler, Hannah Buckley, Jiri Danihelka, Nicola J. Day, Juergen Dengler, David J. Eldridge, Marc Estiarte, Ricardo Garcia-Gonzalez, Eric Garnier, Daniel Gomez-Garcia, Lauren Hallett, Susan Harrison, Tomas Herben, Ricardo Ibanez, Anke Jentsch, Norbert Juergens, Miklos Kertesz, Duncan M. Kimuyu, Katja Klumpp, Mike Le Duc, Frederique Louault, Rob H. Marrs, Gabor Onodi, Robin J. Pakeman, Meelis Partel, Begona Peco, Josep Penuelas, Marta Rueda, Wolfgang Schmidt, Ute Schmiedel, Martin Schuetz, Hana Skalova, Petr Smilauer, Marie Smilauerova, Christian Smit, Ming-Hua Song, Martin Stock, James Val, Vigdis Vandvik, Karsten Wesche, Susan K. Wiser, Ben A. Woodcock, Truman P. Young, Fei-Hai Yu, Amelia A. Wolf, Martin Zobel, Jan Leps
Summary: Analyzing temporal patterns in plant communities is crucial for understanding ecological changes. The LOTVS initiative provides a global collection of vegetation time-series, with 79 datasets from five continents, making it the largest collection of fine-grained vegetation time-series derived from permanent plots. This resource has the potential to support innovative research in vegetation science, plant ecology, and temporal ecology.
JOURNAL OF VEGETATION SCIENCE
(2022)
Article
Ecology
Martti Vasar, John Davison, Siim-Kaarel Sepp, Ladislav Mucina, Jane Oja, Saleh Al-Quraishy, Sten Anslan, Mohammad Bahram, C. Guillermo Bueno, Juan Jose Cantero, Guillaume Decocq, Lauchlan Fraser, Inga Hiiesalu, Wael N. Hozzein, Kadri Koorem, Yiming Meng, Mari Moora, Vladimir Onipchenko, Maarja Opik, Meelis Partel, Tanel Vahter, Leho Tedersoo, Martin Zobel
Summary: Organisms in different ecosystems on Earth form distinct communities, and understanding their patterns and functions is crucial for biodiversity conservation. Current terrestrial biome classifications are insufficient in representing the diversity patterns of soil microbes. In this study, we used high-throughput sequencing and statistical clustering to define soil microbiomes on a global scale. We found strong correlations among different microbial groups and identified pH and temperature as the main environmental drivers of soil microbiome structure. These findings have important implications for theoretical and applied biodiversity research.
GLOBAL ECOLOGY AND BIOGEOGRAPHY
(2022)
Article
Soil Science
Tanel Vahter, Siim-Kaarel Sepp, Alar Astover, Aveliina Helm, Tambet Kikas, Siqiao Liu, Jane Oja, Maarja Opik, Priit Penu, Martti Vasar, Eve Veromann, Martin Zobel, Inga Hiiesalu
Summary: In this study, the relationships between commonly applied agricultural practices and soil fungal diversity were examined in 78 arable fields in Estonia. It was found that fertilizer type and pesticide use frequency significantly influenced soil fungal diversity, while tillage regime had no significant effect. Additionally, a larger proportion of uncropped landscape elements in fields was associated with higher soil fungal richness. The interactions between fertilizer type and pesticide use frequency were also significant and could lead to amplified negative effects on soil fungal species richness.
SOIL BIOLOGY & BIOCHEMISTRY
(2022)
Review
Ecology
V. Bala Chaudhary, E. Penelope Holland, Suw Charman-Anderson, Aidee Guzman, Lukas Bell-Dereske, Tanya E. Cheeke, Adriana Corrales, Jessica Duchicela, Cameron Egan, Manju M. Gupta, S. Emilia Hannula, Rachel Hestrin, Shabana Hoosein, Amit Kumar, Genet Mhretu, Lena Neuenkamp, Pushpa Soti, Yichun Xie, Thorunn Helgason
Summary: This article discusses the definition and classification of mycorrhizal trait framework, highlighting its importance in understanding mycorrhizal symbioses.
TRENDS IN ECOLOGY & EVOLUTION
(2022)
Article
Multidisciplinary Sciences
Mohammad Bahram, Mikk Espenberg, Jaan Parn, Laura Lehtovirta-Morley, Sten Anslan, Kuno Kasak, Urmas Koljalg, Jaan Liira, Martin Maddison, Mari Moora, Ulo Niinemets, Maarja Opik, Meelis Partel, Kaido Soosaar, Martin Zobel, Falk Hildebrand, Leho Tedersoo, Ulo Mander
Summary: Wetland soils are the dominant source of N2O emissions, but the microbial players and processes involved are not well understood. This study found that the abundance of nitrifying archaea is a key factor explaining N2O emissions from wetland soils globally. Climate change and environmental changes may enhance the presence of these archaea and transform wetland soils into an even greater source of N2O.
NATURE COMMUNICATIONS
(2022)
Article
Plant Sciences
C. Guillermo Bueno, Yiming Meng, Lena Neuenkamp
Summary: Mycorrhizal symbiosis plays a regulatory role in the response of woody plants to various non-biotic stress factors associated with global change. However, there is a lack of understanding regarding the interaction among stress factors and their impact on ecosystem processes.
Article
Biodiversity Conservation
Leho Tedersoo, Vladimir Mikryukov, Alexander Zizka, Mohammad Bahram, Niloufar Hagh-Doust, Sten Anslan, Oleh Prylutskyi, Manuel Delgado-Baquerizo, Fernando T. Maestre, Jaan Parn, Maarja Opik, Mari Moora, Martin Zobel, Mikk Espenberg, Ulo Mander, Abdul Nasir Khalid, Adriana Corrales, Ahto Agan, Aida-M Vasco-Palacios, Alessandro Saitta, Andrea C. Rinaldi, Annemieke Verbeken, Bobby P. Sulistyo, Boris Tamgnoue, Brendan Furneaux, Camila Duarte Ritter, Casper Nyamukondiwa, Cathy Sharp, Cesar Marin, Daniyal Gohar, Darta Klavina, Dipon Sharmah, Dong Qin Dai, Eduardo Nouhra, Elisabeth Machteld Biersma, Elisabeth Rahn, Erin K. Cameron, Eske De Crop, Eveli Otsing, Evgeny A. Davydov, Felipe E. Albornoz, Francis Q. Brearley, Franz Buegger, Geoffrey Zahn, Gregory Bonito, Inga Hiiesalu, Isabel C. Barrio, Jacob Heilmann-Clausen, Jelena Ankuda, John Y. Kupagme, Jose G. Macia-Vicente, Joseph Djeugap Fovo, Jozsef Geml, Juha M. Alatalo, Julieta Alvarez-Manjarrez, Kadri Poldmaa, Kadri Runnel, Kalev Adamson, Kari Anne Brathen, Karin Pritsch, Kassim Tchan, Kevin D. Hyde, Kevin K. Newsham, Kristel Panksep, Adebola A. Lateef, Liis Tiirmann, Linda Hansson, Louis J. Lamit, Malka Saba, Maria Tuomi, Marieka Gryzenhout, Marijn Bauters, Meike Piepenbring, Nalin Wijayawardene, Nourou S. Yorou, Olavi Kurina, Peter E. Mortimer, Peter Meidl, Petr Kohout, Rolf Henrik Nilsson, Rasmus Puusepp, Rein Drenkhan, Roberto Garibay-Orijel, Roberto Godoy, Saad Alkahtani, Saleh Rahimlou, Sergey Dudov, Sergei Polme, Soumya Ghosh, Sunil Mundra, Talaat Ahmed, Tarquin Netherway, Terry W. Henkel, Tomas Roslin, Vincent Nteziryayo, Vladimir E. Fedosov, Vladimir G. Onipchenko, W. A. Erandi Yasanthika, Young Woon Lim, Nadejda A. Soudzilovskaia, Alexandre Antonelli, Urmas Koljalg, Kessy Abarenkov
Summary: Fungi are highly diverse organisms that play important roles in ecosystems. However, their distribution patterns and conservation needs are not well studied compared to charismatic animals and plants. This study examined endemicity patterns, vulnerability to global change, and conservation priority areas for functional groups of soil fungi. The study found that most fungi are endemic to tropical habitats and are vulnerable to drought, heat, and land-cover change. Conservation areas of highest priority for fungi include wetlands, tropical forests, and woodlands.
GLOBAL CHANGE BIOLOGY
(2022)
Article
Plant Sciences
Guillermo Gonzalez Fradejas, David Garcia de Leon, Martti Vasar, Kadri Koorem, Martin Zobel, Maarja Opik, Mari Moora, Jose Maria Rey Benayas
Summary: Hedgerows enhance belowground biodiversity by increasing the diversity of arbuscular mycorrhizal (AM) fungi in the soil, contributing to sustainable agriculture and addressing global challenges.
Article
Ecology
Shuang Liang, Ricardo Arraiano-Castilho, Lena Neuenkamp, Hui Li, Zhen Bai, Mengxu Zhang, Jin Yin, Zuoqiang Yuan, Xugao Wang
Summary: This study characterized the fungal communities in rhizosphere soil samples from a temperate forest in Northeast China using high-throughput next-generation sequencing. The results showed that the determinants of fungal community assembly varied across different fungal guilds, indicating their different ecological functions in temperate forest ecosystems.
ECOLOGICAL PROCESSES
(2023)
Article
Biodiversity Conservation
Elisabeth Prangel, Liis Kasari-Toussaint, Lena Neuenkamp, Norbertas Noreika, Reet Karise, Riho Marja, Nele Ingerpuu, Tiiu Kupper, Liis Keerberg, Ede Oja, Mart Meriste, Anu Tiitsaar, Mari Ivask, Aveliina Helm
Summary: During the past century, semi-natural grasslands in Europe have been converted into intensively managed agricultural areas, abandoned or afforested, leading to considerable biodiversity loss and decline in ecosystem service provision and multifunctionality.
JOURNAL OF APPLIED ECOLOGY
(2023)
Article
Plant Sciences
Martin Freitag, Norbert Hoelzel, Lena Neuenkamp, Fons van der Plas, Peter Manning, Anna Abrahao, Joana Bergmann, Runa Boeddinghaus, Ralph Bolliger, Ute Hamer, Ellen Kandeler, Till Kleinebecker, Klaus-Holger Knorr, Sven Marhan, Margot Neyret, Daniel Prati, Gaetane Le Provost, Hugo Saiz, Mark van Kleunen, Deborah Schaefer, Valentin H. H. Klaus
Summary: Experimental evidence shows that grassland plant diversity enhances ecosystem functioning. However, transferring these results to naturally assembled ecosystems remains challenging due to environmental variation and confounding factors. Our study creates gradients of species richness in agricultural grasslands and finds that only a few ecosystem functions respond to plant diversity, mainly related to nitrogen cycling. Among different sites, environmental conditions and land use have greater effects on ecosystem functioning. In conclusion, restoration of plant diversity in naturally assembled grasslands may have limited impact on ecosystem functioning.
JOURNAL OF ECOLOGY
(2023)
Article
Biodiversity Conservation
Lena Neuenkamp, Erica McGale
Summary: Climate change and land-use intensification are negatively impacting ecosystems, affecting their services to humans. The United Nations Sustainable Development Goals call for action to protect and restore ecosystems, which requires transdisciplinary research to understand complex interactions. This study examines barriers to collaboration in plant science and proposes solutions to overcome communication barriers.
PLANTS PEOPLE PLANET
(2023)
Review
Mycology
Shabana Hoosein, Lena Neuenkamp, Pankaj Trivedi, Mark W. Paschke
Summary: Given the increasing population and degradation of soil environments, understanding the fundamental ecology of soil biota and plant microbiomes is crucial for the sustainability of soil systems. This study focuses on the drivers and complexity of arbuscular mycorrhizal (AM) fungal-bacterial relationships, emphasizes the need for interdisciplinary tools in AM fungal research, and suggests the utilization of bacterial datasets to gain insights into these relationships. The findings highlight the importance of interdependent microbial relationships and propose the use of pattern-based inference tools and synthetic communities to improve microbial inocula and products.
FRONTIERS IN FUNGAL BIOLOGY
(2023)
Correction
Ecology
M. Vasar, J. Davison, S. -K Sepp, L. Mucina, J. Oja, S. Al-Quraishy, S. Anslan, M. Bahram, C. G. Bueno, J. J. Cantero, G. Decocq, L. Fraser, I Hiiesalu, W. N. Hozzein, K. Koorem, Y. Meng, M. Moora, V Onipchenko, M. Opik, M. Zobel
GLOBAL ECOLOGY AND BIOGEOGRAPHY
(2022)
Correction
Ecology
L. Neuenkamp