Diversity in a honey bee pathogen: first report of a third master variant of the Deformed Wing Virus quasispecies

REVIEW: Emerging viral disease risk to pollinating insects: ecological, evolutionary and anthropogenic factors

(2015) Robyn Manley et al.   JOURNAL OF APPLIED ECOLOGY

Disease associations between honeybees and bumblebees as a threat to wild pollinators

(2014) M. A. Fürst et al.   NATURE

MosaicSolver: a tool for determining recombinants of viral genomes from pileup data

(2014) Graham R. Wood et al.   NUCLEIC ACIDS RESEARCH

Distinct Dictation of Japanese Encephalitis Virus-Induced Neuroinflammation and Lethality via Triggering TLR3 and TLR4 Signal Pathways

(2014) Young Woo Han et al.   PLoS Pathogens

A Virulent Strain of Deformed Wing Virus (DWV) of Honeybees (Apis mellifera) Prevails after Varroa destructor-Mediated, or In Vitro, Transmission

(2014) Eugene V. Ryabov et al.   PLoS Pathogens

Expanded classification of hepatitis C virus into 7 genotypes and 67 subtypes: Updated criteria and genotype assignment web resource

(2013) Donald B. Smith et al.   HEPATOLOGY

Varroa-Virus Interaction in Collapsing Honey Bee Colonies

(2013) Roy M. Francis et al.   PLoS One

Within-host and between-host evolutionary rates across the HIV-1 genome

(2013) Samuel Alizon et al.   Retrovirology

Progress towards a hepatitis C virus vaccine

(2013) Lok Man John Law et al.   Emerging Microbes & Infections

De novo assembly of highly diverse viral populations

(2012) Xiao Yang et al.   BMC GENOMICS

Viral Quasispecies Evolution

(2012) E. Domingo et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Accurate Model Selection of Relaxed Molecular Clocks in Bayesian Phylogenetics

(2012) Guy Baele et al.   MOLECULAR BIOLOGY AND EVOLUTION

Improving the Accuracy of Demographic and Molecular Clock Model Comparison While Accommodating Phylogenetic Uncertainty

(2012) Guy Baele et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

De novo assembly and genotyping of variants using colored de Bruijn graphs

(2012) Zamin Iqbal et al.   NATURE GENETICS

Dynamics of Hepatitis B Virus Quasispecies in Association with Nucleos(t)ide Analogue Treatment Determined by Ultra-Deep Sequencing

(2012) Norihiro Nishijima et al.   PLoS One

A quantitative quasispecies theory-based model of virus escape mutation under immune selection

(2012) H.-J. Woo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global Honey Bee Viral Landscape Altered by a Parasitic Mite

(2012) S. J. Martin et al.   SCIENCE

Deformed wing virus

(2012) Declan C. Schroeder et al.   Virulence

Dead or Alive: Deformed Wing Virus and Varroa destructor Reduce the Life Span of Winter Honeybees

(2011) Benjamin Dainat et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The mode and tempo of hepatitis C virus evolution within and among hosts

(2011) Rebecca R Gray et al.   BMC EVOLUTIONARY BIOLOGY

Hepatitis C virus resistance to protease inhibitors

(2011) Philippe Halfon et al.   JOURNAL OF HEPATOLOGY

Replication of Varroa destructor virus 1 (VDV-1) and a Varroa destructor virus 1–deformed wing virus recombinant (VDV-1–DWV) in the head of the honey bee

(2011) Naama Zioni et al.   VIROLOGY

RDP3: a flexible and fast computer program for analyzing recombination

(2010) D. P. Martin et al.   BIOINFORMATICS

Recombinants between Deformed wing virus and Varroa destructor virus-1 may prevail in Varroa destructor-infested honeybee colonies

(2010) J. Moore et al.   JOURNAL OF GENERAL VIROLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The Evolutionary Analysis of Emerging Low Frequency HIV-1 CXCR4 Using Variants through Time—An Ultra-Deep Approach

(2010) John Archer et al.   PLoS Computational Biology

Quasispecies Theory and the Behavior of RNA Viruses

(2010) Adam S. Lauring et al.   PLoS Pathogens

Deformed Wing Virus Implicated in Overwintering Honeybee Colony Losses

(2009) A. C. Highfield et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Minority Quasispecies of Drug‐Resistant HIV‐1 That Lead to Early Therapy Failure in Treatment‐Naive and ‐Adherent Patients

(2008) Karin J. Metzner et al.   CLINICAL INFECTIOUS DISEASES

Economic valuation of the vulnerability of world agriculture confronted with pollinator decline

(2008) Nicola Gallai et al.   ECOLOGICAL ECONOMICS

Genetic Analysis of Israel Acute Paralysis Virus: Distinct Clusters Are Circulating in the United States

(2008) G. Palacios et al.   JOURNAL OF VIROLOGY

Cross-Species Virus Transmission and the Emergence of New Epidemic Diseases

(2008) C. R. Parrish et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Hantavirus Evolution in Relation to Its Rodent and Insectivore Hosts: No Evidence for Codivergence

(2008) C. Ramsden et al.   MOLECULAR BIOLOGY AND EVOLUTION

Smooth Skyride through a Rough Skyline: Bayesian Coalescent-Based Inference of Population Dynamics

(2008) V. N. Minin et al.   MOLECULAR BIOLOGY AND EVOLUTION

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION

The use of RNA-dependent RNA polymerase for the taxonomic assignment of Picorna-like viruses (order Picornavirales) infecting Apis mellifera L. populations

(2008) Andrea C Baker et al.   Virology Journal