Meta-omics uncover temporal regulation of pathways across oral microbiome genera during in vitro sugar metabolism

Microbiota diversity and gene expression dynamics in human oral biofilms

(2014) Alfonso Benítez-Páez et al.   BMC GENOMICS

Recent advances in genomic DNA sequencing of microbial species from single cells

(2014) Roger S. Lasken et al.   NATURE REVIEWS GENETICS

Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle

(2014) Xuesong He et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metatranscriptomics of the Human Oral Microbiome during Health and Disease

(2014) P. Jorth et al.   mBio

Single cell genomics of bacterial pathogens: outlook for infectious disease research

(2014) Jeffrey S McLean et al.   Genome Medicine

An in vitro biofilm model system maintaining a highly reproducible species and metabolic diversity approaching that of the human oral microbiome

(2013) Anna Edlund et al.   Microbiome

Effect of Periodontal Pathogens on the Metatranscriptome of a Healthy Multispecies Biofilm Model

(2012) J. Frias-Lopez et al.   JOURNAL OF BACTERIOLOGY

A framework for human microbiome research

(2012)   NATURE

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

Identifying Low pH Active and Lactate-Utilizing Taxa within Oral Microbiome Communities from Healthy Children Using Stable Isotope Probing Techniques

(2012) Jeffrey S. McLean et al.   PLoS One

Species-Level Analysis of DNA Sequence Data from the NIH Human Microbiome Project

(2012) Sean Conlan et al.   PLoS One

Mass spectral molecular networking of living microbial colonies

(2012) J. Watrous et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cultivable Anaerobic Microbiota of Severe Early Childhood Caries

(2011) A. C. R. Tanner et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Transcriptome analysis reveals that ClpXP proteolysis controls key virulence properties of Streptococcus mutans

(2011) J. K. Kajfasz et al.   MICROBIOLOGY-SGM

Bacterial 16S Sequence Analysis of Severe Caries in Young Permanent Teeth

(2010) E. L. Gross et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Using DGGE profiling to develop a novel culture medium suitable for oral microbial communities

(2010) Y. Tian et al.   Molecular Oral Microbiology

The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information

(2010) T. Chen et al.   Database-The Journal of Biological Databases and Curation

Correlations of oral bacterial arginine and urea catabolism with caries experience

(2010) M. M. Nascimento et al.   Oral microbiology and immunology

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Identification of oral species of the genusVeillonellaby polymerase chain reaction

(2009) E. Igarashi et al.   Oral microbiology and immunology