Redefinition and Unification of the SXT/R391 Family of Integrative and Conjugative Elements

Characterization of the Actinobacillus pleuropneumoniae SXT-related integrative and conjugative element ICEApl2 and analysis of the encoded FloR protein: hydrophobic residues in transmembrane domains contribute dynamically to florfenicol and chloramphenicol efflux

(2017) Yinghui Li et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Clustal Omega for making accurate alignments of many protein sequences

(2017) Fabian Sievers et al.   PROTEIN SCIENCE

Salmonella genomic island 1 (SGI1) reshapes the mating apparatus of IncC conjugative plasmids to promote self-propagation

(2017) Nicolas Carraro et al.   PLoS Genetics

Analysis and comparative genomics of R997, the first SXT/R391 integrative and conjugative element (ICE) of the Indian Sub-Continent

(2017) Michael P. Ryan et al.   Scientific Reports

Characterization of SXT/R391 Integrative and Conjugative Elements in Proteus mirabilis Isolates from Food-Producing Animals in China

(2016) Chang-Wei Lei et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Unveiling the pan-genome of the SXT/R391 family of ICEs: molecular characterisation of new variable regions of SXT/R391-like ICEs detected in Pseudoalteromonas sp. and Vibrio scophthalmi

(2016) Arturo Rodríguez-Blanco et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Comparative genomic analysis of six new-found integrative conjugative elements (ICEs) in Vibrio alginolyticus

(2016) Peng Luo et al.   BMC MICROBIOLOGY

missMDA: A Package for Handling Missing Values in Multivariate Data Analysis

(2016) Julie Josse et al.   Journal of Statistical Software

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database

(2016) Baofeng Jia et al.   NUCLEIC ACIDS RESEARCH

Variations in SXT elements in epidemic Vibrio cholerae O1 El Tor strains in China

(2016) Ruibai Wang et al.   Scientific Reports

SXT/R391 integrative and conjugative elements in Proteus species reveal abundant genetic diversity and multidrug resistance

(2016) Xinyue Li et al.   Scientific Reports

A λ Cro-Like Repressor Is Essential for the Induction of Conjugative Transfer of SXT/R391 Elements in Response to DNA Damage

(2015) Dominic Poulin-Laprade et al.   JOURNAL OF BACTERIOLOGY

Pathogenicity Island Cross Talk Mediated by Recombination Directionality Factors Facilitates Excision from the Chromosome

(2015) Megan R. Carpenter et al.   JOURNAL OF BACTERIOLOGY

Transfer activation of SXT/R391 integrative and conjugative elements: unraveling the SetCD regulon

(2015) Dominic Poulin-Laprade et al.   NUCLEIC ACIDS RESEARCH

A globally distributed mobile genetic element inhibits natural transformation ofVibrio cholerae

(2015) Ankur B. Dalia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Replication and Active Partition of Integrative and Conjugative Elements (ICEs) of the SXT/R391 Family: The Line between ICEs and Conjugative Plasmids Is Getting Thinner

(2015) Nicolas Carraro et al.   PLoS Genetics

FactoMineR: AnRPackage for Multivariate Analysis

(2015) Sébastien Lê et al.   Journal of Statistical Software

PrimerDesign-M: a multiple-alignment based multiple-primer design tool for walking across variable genomes

(2014) H. Yoon et al.   BIOINFORMATICS

Acquisition and Evolution of SXT-R391 Integrative Conjugative Elements in the Seventh-Pandemic Vibrio cholerae Lineage

(2014) M. Spagnoletti et al.   mBio

GET_HOMOLOGUES, a Versatile Software Package for Scalable and Robust Microbial Pangenome Analysis

(2013) Bruno Contreras-Moreira et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The mosaic accessory gene structures of the SXT/R391-like integrative and conjugative elements derived from Vibrio spp. isolated from aquatic products and environment in the Yangtze River estuary, China

(2013) Yuze Song et al.   BMC MICROBIOLOGY

DNA-Damaging Agents Induce the RecA-Independent Homologous Recombination Functions of Integrating Conjugative Elements of the SXT/R391 Family

(2013) G. Garriss et al.   JOURNAL OF BACTERIOLOGY

BLAST: a more efficient report with usability improvements

(2013) Grzegorz M. Boratyn et al.   NUCLEIC ACIDS RESEARCH

A new integrative conjugative element detected in Haitian isolates of Vibrio cholerae non-O1/non-O139

(2013) Daniela Ceccarelli et al.   RESEARCH IN MICROBIOLOGY

Integrating Conjugative Elements as Vectors of Antibiotic, Mercury, and Quaternary Ammonium Compound Resistance in Marine Aquaculture Environments

(2012) Arturo Rodríguez-Blanco et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Genomic analysis of ICEVchBan8: An atypical genetic element inVibrio cholerae

(2012) Elisa Taviani et al.   FEBS LETTERS

Integrating conjugative elements of the SXT/R391 family from fish-isolatedVibriosencode restriction-modification systems that confer resistance to bacteriophages

(2012) Miguel Balado et al.   FEMS MICROBIOLOGY ECOLOGY

Presence of SXT integrating conjugative element in marine bacteria isolated from the mucus of the coralFungia echinatafrom Andaman Sea

(2012) Jhasketan Badhai et al.   FEMS MICROBIOLOGY LETTERS

Database resources of the National Center for Biotechnology Information

(2012)   NUCLEIC ACIDS RESEARCH

ICEVchInd5 is prevalent in epidemic Vibrio cholerae O1 El Tor strains isolated in India

(2011) Daniela Ceccarelli et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Antibiotic resistance mechanisms of Vibrio cholerae

(2011) M. Kitaoka et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Chromosomally Encoded blaCMY-2 Located on a Novel SXT/R391-Related Integrating Conjugative Element in a Proteus mirabilis Clinical Isolate

(2010) S. Harada et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Beyond antibiotic resistance: integrating conjugative elements of the SXT/R391 family that encode novel diguanylate cyclases participate to c-di-GMP signalling inVibrio cholerae

(2009) Eric Bordeleau et al.   ENVIRONMENTAL MICROBIOLOGY

Genomic islands are dynamic, ancient integrative elements in bacterial evolution

(2009) E. Fidelma Boyd et al.   TRENDS IN MICROBIOLOGY

Comparative ICE Genomics: Insights into the Evolution of the SXT/R391 Family of ICEs

(2009) Rachel A. F. Wozniak et al.   PLoS Genetics

Mobile Antibiotic Resistance Encoding Elements Promote Their Own Diversity

(2009) Geneviève Garriss et al.   PLoS Genetics

Vibrio cholerae non-O1, non-O139 strains isolated before 1992 from Varanasi, India are multiple drug resistant, contain intSXT, dfr18 and aadA5 genes

(2008) Harapriya Mohapatra et al.   ENVIRONMENTAL MICROBIOLOGY

Environmental Vibrio spp., isolated in Mozambique, contain a polymorphic group of integrative conjugative elements and class 1 integrons

(2008) Elisa Taviani et al.   FEMS MICROBIOLOGY ECOLOGY

Identification of the Origin of Transfer (oriT) and a New Gene Required for Mobilization of the SXT/R391 Family of Integrating Conjugative Elements

(2008) D. Ceccarelli et al.   JOURNAL OF BACTERIOLOGY

An Improved General Amino Acid Replacement Matrix

(2008) S. Q. Le et al.   MOLECULAR BIOLOGY AND EVOLUTION